Strain Fitness in Shewanella loihica PV-4 around Shew_3287

Experiment: 5-Hydroxymethylfurfural 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 10 mM
3,928,466	-				+0.6
3,928,477	+				-0.4
3,928,534	-				-0.2
3,928,534	-				-0.9
3,928,570	+				+0.3
3,928,578	-				+0.8
3,928,599	+				+0.2
3,928,599	+				-0.1
3,928,599	+				+0.2
3,928,607	-				-0.2
3,928,622	-				+0.5
3,928,653	+				-1.2
3,928,668	+				+0.6
3,928,695	+				-0.1
3,928,722	+				-0.2
3,928,722	-				-1.5
3,928,724	-				+0.4
3,928,730	+				-0.3
3,928,730	+				-0.2
3,928,730	+				+0.3
3,928,738	-				+0.2
3,928,738	-				+0.0
3,928,738	-				+0.1
3,928,752	+				+0.0
3,928,752	+				+0.2
3,928,758	-				-0.5
3,928,760	-				-1.7
3,928,760	-				+0.4
3,928,760	-				-0.3
3,928,760	-				-0.1
3,928,880	+		Shew_3286	0.18	+0.4
3,928,887	+		Shew_3286	0.20	-0.5
3,928,887	+		Shew_3286	0.20	+1.1
3,928,887	+		Shew_3286	0.20	+0.7
3,928,887	+		Shew_3286	0.20	-0.0
3,928,887	+		Shew_3286	0.20	-0.4
3,928,888	+		Shew_3286	0.20	+0.2
3,928,888	+		Shew_3286	0.20	+0.5
3,928,888	+		Shew_3286	0.20	+0.6
3,928,888	+		Shew_3286	0.20	+0.2
3,928,888	+		Shew_3286	0.20	+0.1
3,928,888	+		Shew_3286	0.20	-0.1
3,928,888	+		Shew_3286	0.20	+0.2
3,928,888	+		Shew_3286	0.20	+0.7
3,928,888	+		Shew_3286	0.20	+0.1
3,928,896	-		Shew_3286	0.21	-0.4
3,928,896	-		Shew_3286	0.21	-0.4
3,928,896	-		Shew_3286	0.21	-0.4
3,928,896	-		Shew_3286	0.21	+0.0
3,928,896	-		Shew_3286	0.21	-1.1
3,928,896	-		Shew_3286	0.21	+0.3
3,928,896	-		Shew_3286	0.21	+1.3
3,928,896	-		Shew_3286	0.21	-0.4
3,928,896	-		Shew_3286	0.21	-0.4
3,928,896	-		Shew_3286	0.21	-0.8
3,928,926	+		Shew_3286	0.27	-1.4
3,928,976	+		Shew_3286	0.36	+0.2
3,928,976	+		Shew_3286	0.36	+0.0
3,928,977	-		Shew_3286	0.36	+0.1
3,928,984	-		Shew_3286	0.37	-1.9
3,928,984	-		Shew_3286	0.37	+0.3
3,928,984	-		Shew_3286	0.37	+0.3
3,928,988	+		Shew_3286	0.38	+0.0
3,928,990	+		Shew_3286	0.38	+0.7
3,928,990	+		Shew_3286	0.38	-0.3
3,928,993	+		Shew_3286	0.39	+0.4
3,928,995	+		Shew_3286	0.39	+0.1
3,928,995	+		Shew_3286	0.39	+0.4
3,928,995	+		Shew_3286	0.39	+0.5
3,928,995	+		Shew_3286	0.39	-1.2
3,928,995	+		Shew_3286	0.39	+0.4
3,928,995	+		Shew_3286	0.39	+0.1
3,928,995	+		Shew_3286	0.39	-0.1
3,928,995	+		Shew_3286	0.39	-0.3
3,928,995	+		Shew_3286	0.39	-0.6
3,928,995	+		Shew_3286	0.39	-1.4
3,928,995	+		Shew_3286	0.39	+0.3
3,928,996	-		Shew_3286	0.39	+0.7
3,928,998	-		Shew_3286	0.40	+0.2
3,929,003	-		Shew_3286	0.41	+0.4
3,929,003	-		Shew_3286	0.41	+0.5
3,929,003	-		Shew_3286	0.41	-0.2
3,929,003	-		Shew_3286	0.41	-0.3
3,929,003	-		Shew_3286	0.41	+1.5
3,929,003	-		Shew_3286	0.41	+0.6
3,929,003	-		Shew_3286	0.41	+0.4
3,929,004	-		Shew_3286	0.41	-0.1
3,929,004	-		Shew_3286	0.41	-0.4
3,929,004	-		Shew_3286	0.41	+0.0
3,929,004	-		Shew_3286	0.41	+0.9
3,929,004	-		Shew_3286	0.41	+0.2
3,929,004	-		Shew_3286	0.41	+0.4
3,929,004	-		Shew_3286	0.41	+0.7
3,929,010	-		Shew_3286	0.42	+0.4
3,929,022	+		Shew_3286	0.44	+0.2
3,929,022	+		Shew_3286	0.44	-0.1
3,929,074	+		Shew_3286	0.53	+0.5
3,929,074	+		Shew_3286	0.53	+0.4
3,929,074	+		Shew_3286	0.53	+0.5
3,929,082	-		Shew_3286	0.55	+0.2
3,929,082	-		Shew_3286	0.55	+0.3
3,929,082	-		Shew_3286	0.55	+0.3
3,929,082	-		Shew_3286	0.55	+0.3
3,929,082	-		Shew_3286	0.55	+0.2
3,929,089	-		Shew_3286	0.56	-1.3
3,929,103	-		Shew_3286	0.58	-1.2
3,929,121	-		Shew_3286	0.62	-0.1
3,929,123	-		Shew_3286	0.62	-0.2
3,929,123	-		Shew_3286	0.62	+0.4
3,929,131	+		Shew_3286	0.63	-0.2
3,929,131	+		Shew_3286	0.63	-0.1
3,929,134	-		Shew_3286	0.64	+1.4
3,929,134	-		Shew_3286	0.64	+0.2
3,929,146	-		Shew_3286	0.66	+0.2
3,929,149	-		Shew_3286	0.67	-0.2
3,929,151	-		Shew_3286	0.67	+0.2
3,929,153	+		Shew_3286	0.67	-0.2
3,929,162	-		Shew_3286	0.69	-0.2
3,929,162	-		Shew_3286	0.69	+0.1
3,929,181	+		Shew_3286	0.72	+1.3
3,929,189	-		Shew_3286	0.74	+0.8
3,929,194	+		Shew_3286	0.75	+0.0
3,929,202	-		Shew_3286	0.76	+0.5
3,929,204	+		Shew_3286	0.77	+0.1
3,929,204	+		Shew_3286	0.77	+0.9
3,929,212	+		Shew_3286	0.78	+0.1
3,929,212	-		Shew_3286	0.78	+0.4
3,929,212	+		Shew_3286	0.78	+0.2
3,929,212	+		Shew_3286	0.78	-0.9
3,929,212	-		Shew_3286	0.78	+0.3
3,929,220	-		Shew_3286	0.79	-0.0
3,929,225	-		Shew_3286	0.80	-0.0
3,929,226	+		Shew_3286	0.80	-0.2
3,929,226	+		Shew_3286	0.80	+0.3
3,929,227	+		Shew_3286	0.81	+0.1
3,929,227	+		Shew_3286	0.81	-0.6
3,929,246	-		Shew_3286	0.84	+0.1
3,929,246	-		Shew_3286	0.84	-0.5
3,929,258	+		Shew_3286	0.86	-0.1
3,929,258	+		Shew_3286	0.86	+0.3
3,929,258	+		Shew_3286	0.86	+0.1
3,929,258	+		Shew_3286	0.86	-0.3
3,929,258	+		Shew_3286	0.86	+0.1
3,929,258	+		Shew_3286	0.86	+1.5
3,929,258	+		Shew_3286	0.86	-1.5
3,929,265	-		Shew_3286	0.87	-0.3
3,929,266	-		Shew_3286	0.88	-0.1
3,929,266	-		Shew_3286	0.88	-0.2
3,929,266	-		Shew_3286	0.88	+0.2
3,929,266	-		Shew_3286	0.88	-0.1
3,929,266	-		Shew_3286	0.88	+0.2
3,929,266	-		Shew_3286	0.88	-0.8
3,929,268	+		Shew_3286	0.88	+0.5
3,929,276	-		Shew_3286	0.89	-0.7
3,929,276	-		Shew_3286	0.89	+0.8
3,929,276	-		Shew_3286	0.89	-0.7
3,929,287	+				+0.2
3,929,287	+				+0.3
3,929,287	+				+0.4
3,929,287	+				+0.3
3,929,293	-				+0.1
3,929,293	-				+0.9
3,929,293	-				-0.1
3,929,295	-				+0.4
3,929,295	-				-0.0
3,929,295	-				-0.7
3,929,295	-				-0.7
3,929,295	-				+0.3
3,929,296	+				+0.4
3,929,304	-				+2.7
3,929,339	+				-0.2
3,929,347	-				+0.3
3,929,348	+				+0.5
3,929,348	+				-0.0
3,929,349	+				-0.6
3,929,357	-				-0.3
3,929,374	+				-0.3
3,929,388	+				+0.1
3,929,388	+				+0.0
3,929,393	+				-1.3
3,929,396	-				+0.2
3,929,401	-				-0.7
3,929,411	+				-1.0
3,929,411	+				-1.2
3,929,411	+				+0.2
3,929,411	+				+0.5
3,929,411	+				-0.7
3,929,411	+				-0.2
3,929,411	+				+1.7
3,929,411	+				+0.1
3,929,411	+				+1.6
3,929,414	-				+1.9
3,929,414	-				+0.7
3,929,414	-				+0.3
3,929,417	+				+0.3
3,929,417	+				-1.4
3,929,417	+				-0.9
3,929,422	+				-0.1
3,929,422	+				-0.1
3,929,422	+				+0.0
3,929,422	+				+0.1
3,929,422	+				+0.4
3,929,422	+				-0.1
3,929,422	+				+0.2
3,929,422	+				+0.3
3,929,425	-				-0.2
3,929,427	+				+0.2
3,929,430	-				+1.2
3,929,430	-				+0.4
3,929,430	-				-1.3
3,929,430	-				+1.1
3,929,430	-				-0.6
3,929,431	-				+0.1
3,929,432	+				+0.5
3,929,434	+				+0.6
3,929,434	+				-0.2
3,929,438	-				+1.4
3,929,475	+				-0.0
3,929,516	+		Shew_3287	0.15	+0.5
3,929,524	-		Shew_3287	0.17	+0.5
3,929,534	-		Shew_3287	0.20	+1.5
3,929,535	-		Shew_3287	0.21	-1.8
3,929,536	+		Shew_3287	0.21	+0.5
3,929,536	+		Shew_3287	0.21	+0.3
3,929,544	-		Shew_3287	0.23	-0.7
3,929,549	-		Shew_3287	0.25	+0.2
3,929,566	-		Shew_3287	0.30	+0.4
3,929,594	+		Shew_3287	0.38	-0.1
3,929,602	-		Shew_3287	0.40	+0.2
3,929,602	-		Shew_3287	0.40	+0.5
3,929,669	-		Shew_3287	0.60	-0.2
3,929,694	+		Shew_3287	0.68	-0.1
3,929,705	+		Shew_3287	0.71	+3.5
3,929,705	+		Shew_3287	0.71	+0.8
3,929,705	+		Shew_3287	0.71	-1.9
3,929,705	+		Shew_3287	0.71	-0.2
3,929,705	+		Shew_3287	0.71	+0.9
3,929,705	+		Shew_3287	0.71	-0.4
3,929,713	-		Shew_3287	0.74	+0.3
3,929,713	-		Shew_3287	0.74	+1.1
3,929,713	-		Shew_3287	0.74	-0.5
3,929,713	-		Shew_3287	0.74	-0.1
3,929,713	-		Shew_3287	0.74	+0.0
3,929,714	-		Shew_3287	0.74	+0.3
3,929,745	-		Shew_3287	0.83	-0.7
3,929,750	-		Shew_3287	0.85	-0.0
3,929,755	-		Shew_3287	0.86	+0.5
3,929,760	-		Shew_3287	0.88	+0.2
3,929,770	-				-0.1
3,929,777	+				-0.0
3,929,818	+				+1.1
3,929,829	+				-0.1
3,929,833	+				+0.7
3,929,834	+				+0.1
3,929,837	-				+4.7
3,929,841	-				+1.1
3,929,841	-				-0.1
3,929,841	-				+0.7
3,929,861	-				-0.4
3,929,880	+				+0.4
3,929,880	+				+0.4
3,929,882	+				+0.5
3,929,933	+				+0.2
3,929,951	+				+0.3
3,929,995	-				-0.5
3,930,008	-				+0.0
3,930,111	-				-0.4
3,930,111	-				+0.4
3,930,155	+				+0.3
3,930,155	+				+0.3
3,930,168	+				+0.1
3,930,172	+				-0.7
3,930,202	+				-0.3
3,930,212	-				+0.9
3,930,226	-				-0.1
3,930,231	-				-0.5
3,930,237	+				+0.5
3,930,281	-				+0.4
3,930,376	+				+0.0
3,930,391	-				+1.0
3,930,471	-				+0.9
3,930,510	-				-0.3