Strain Fitness in Shewanella loihica PV-4 around Shew_2354

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2353 and Shew_2354 are separated by 161 nucleotidesShew_2354 and Shew_2355 are separated by 164 nucleotides Shew_2353: Shew_2353 - magnesium and cobalt transport protein CorA (RefSeq), at 2,747,062 to 2,748,009 _2353 Shew_2354: Shew_2354 - hypothetical protein (RefSeq), at 2,748,171 to 2,748,539 _2354 Shew_2355: Shew_2355 - hypothetical protein (RefSeq), at 2,748,704 to 2,749,474 _2355 Position (kb) 2748 2749Strain fitness (log2 ratio) -1 0 1at 2748.106 kb on + strandat 2748.230 kb on + strand, within Shew_2354at 2748.470 kb on + strand, within Shew_2354at 2748.929 kb on - strand, within Shew_2355

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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2,748,106 + -1.7
2,748,230 + Shew_2354 0.16 -0.6
2,748,470 + Shew_2354 0.81 -0.5
2,748,929 - Shew_2355 0.29 -0.2

Or see this region's nucleotide sequence