Strain Fitness in Shewanella loihica PV-4 around Shew_2177

Experiment: 5-Hydroxymethylfurfural 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 10 mM
2,536,996	-				+0.5
2,537,512	+				+0.3
2,537,577	+				+1.5
2,537,577	+				-0.3
2,537,577	+				+0.7
2,537,585	-				-0.5
2,537,585	-				+0.0
2,537,610	+				+0.1
2,537,610	+				+1.1
2,537,611	-				-0.7
2,537,618	-				+0.3
2,537,688	+				+1.3
2,537,711	-				+0.1
2,537,751	+		Shew_2177	0.12	+0.3
2,537,751	+		Shew_2177	0.12	+0.2
2,537,751	+		Shew_2177	0.12	+1.0
2,537,751	+		Shew_2177	0.12	+0.9
2,537,839	+		Shew_2177	0.27	-0.5
2,537,839	+		Shew_2177	0.27	+1.2
2,537,847	-		Shew_2177	0.28	-0.3
2,537,988	-		Shew_2177	0.52	+0.2
2,537,988	+		Shew_2177	0.52	+0.4
2,537,988	-		Shew_2177	0.52	+0.1
2,537,988	-		Shew_2177	0.52	+0.8
2,538,001	+		Shew_2177	0.54	-0.6
2,538,004	-		Shew_2177	0.55	+1.0
2,538,006	+		Shew_2177	0.55	+0.1
2,538,006	+		Shew_2177	0.55	+0.7
2,538,007	-		Shew_2177	0.55	+0.4
2,538,014	-		Shew_2177	0.56	+0.2
2,538,014	-		Shew_2177	0.56	-0.4
2,538,014	-		Shew_2177	0.56	+0.9
2,538,029	+		Shew_2177	0.59	-0.4
2,538,037	+		Shew_2177	0.60	-0.2
2,538,121	+		Shew_2177	0.74	+0.4
2,538,128	-		Shew_2177	0.75	-0.0
2,538,142	+		Shew_2177	0.78	+0.5
2,538,142	+		Shew_2177	0.78	+1.3
2,538,150	-		Shew_2177	0.79	+1.2
2,538,150	-		Shew_2177	0.79	+0.2
2,538,224	-				+5.0
2,538,249	-				-0.0
2,538,249	-				-2.4
2,538,254	-				+1.4
2,538,256	-				+0.4
2,538,256	-				-0.1
2,538,256	-				-0.6
2,538,284	+				+0.1
2,538,340	-				+0.3
2,538,346	+				+0.4
2,538,349	-				+0.0
2,538,351	+				-0.2
2,538,432	-		Shew_2178	0.11	-0.7
2,538,538	+		Shew_2178	0.54	+2.2
2,538,543	+		Shew_2178	0.56	+0.7
2,538,548	+		Shew_2178	0.58	-0.0
2,538,548	+		Shew_2178	0.58	+1.4
2,538,548	+		Shew_2178	0.58	-0.1
2,538,551	-		Shew_2178	0.59	+0.9
2,538,558	-		Shew_2178	0.62	+0.3
2,538,558	-		Shew_2178	0.62	+0.1
2,538,558	-		Shew_2178	0.62	+0.2
2,538,558	-		Shew_2178	0.62	+0.2
2,538,558	-		Shew_2178	0.62	+0.1
2,538,558	-		Shew_2178	0.62	-0.4
2,538,598	+		Shew_2178	0.78	-3.2
2,538,598	+		Shew_2178	0.78	+1.5
2,538,608	+		Shew_2178	0.82	+0.3
2,538,608	+		Shew_2178	0.82	+1.1
2,538,608	+		Shew_2178	0.82	-0.0
2,538,608	+		Shew_2178	0.82	-1.0
2,538,608	+		Shew_2178	0.82	+1.4
2,538,608	+		Shew_2178	0.82	-0.1
2,538,608	+		Shew_2178	0.82	+0.0
2,538,608	+		Shew_2178	0.82	+1.5
2,538,608	+		Shew_2178	0.82	+0.4
2,538,608	+		Shew_2178	0.82	+0.5
2,538,608	+		Shew_2178	0.82	+1.3
2,538,608	+		Shew_2178	0.82	+0.8
2,538,608	+		Shew_2178	0.82	+0.2
2,538,608	+		Shew_2178	0.82	+0.7
2,538,608	+		Shew_2178	0.82	+1.1
2,538,608	+		Shew_2178	0.82	+0.3
2,538,608	+		Shew_2178	0.82	-0.1
2,538,608	+		Shew_2178	0.82	-0.0
2,538,608	+		Shew_2178	0.82	-0.0
2,538,608	+		Shew_2178	0.82	+0.3
2,538,608	+		Shew_2178	0.82	-1.3
2,538,608	+		Shew_2178	0.82	+4.9
2,538,611	-		Shew_2178	0.83	+0.2
2,538,616	-		Shew_2178	0.85	+0.6
2,538,616	-		Shew_2178	0.85	-0.1
2,538,616	-		Shew_2178	0.85	-0.2
2,538,616	-		Shew_2178	0.85	+0.2
2,538,616	-		Shew_2178	0.85	+0.5
2,538,616	-		Shew_2178	0.85	+0.8
2,538,616	-		Shew_2178	0.85	+0.2
2,538,616	-		Shew_2178	0.85	-0.2
2,538,616	-		Shew_2178	0.85	-0.3
2,538,616	-		Shew_2178	0.85	+0.6
2,538,616	-		Shew_2178	0.85	+0.6
2,538,616	-		Shew_2178	0.85	-1.2
2,538,616	-		Shew_2178	0.85	+0.6
2,538,616	-		Shew_2178	0.85	+0.1
2,538,616	-		Shew_2178	0.85	+1.5
2,538,616	-		Shew_2178	0.85	+1.5
2,538,616	-		Shew_2178	0.85	+0.5
2,538,616	-		Shew_2178	0.85	+0.0
2,538,638	-				-0.7
2,538,674	+				-0.1
2,538,674	+				+1.2
2,538,674	+				-2.8
2,538,676	+				+0.5
2,538,717	-				-0.2
2,538,769	+				+1.3
2,538,827	+				+1.2
2,538,880	+				-2.2
2,538,984	+		Shew_2179	0.20	+0.5
2,538,984	+		Shew_2179	0.20	-1.8
2,538,984	+		Shew_2179	0.20	+0.6
2,538,992	-		Shew_2179	0.21	-1.3
2,538,992	-		Shew_2179	0.21	-0.1
2,538,992	-		Shew_2179	0.21	-1.3
2,538,992	-		Shew_2179	0.21	+0.5
2,538,992	-		Shew_2179	0.21	-0.7
2,538,992	-		Shew_2179	0.21	-1.2
2,538,992	-		Shew_2179	0.21	+0.6
2,539,000	-		Shew_2179	0.22	-0.2
2,539,000	-		Shew_2179	0.22	+0.5
2,539,006	+		Shew_2179	0.22	+2.5
2,539,007	+		Shew_2179	0.23	+2.0
2,539,007	+		Shew_2179	0.23	-2.0
2,539,007	+		Shew_2179	0.23	+0.3
2,539,015	+		Shew_2179	0.23	+1.1
2,539,015	+		Shew_2179	0.23	+0.1
2,539,015	+		Shew_2179	0.23	-0.9
2,539,015	-		Shew_2179	0.23	+0.4
2,539,015	+		Shew_2179	0.23	-0.1
2,539,015	+		Shew_2179	0.23	+0.1
2,539,015	+		Shew_2179	0.23	-0.3
2,539,015	+		Shew_2179	0.23	+1.9
2,539,015	+		Shew_2179	0.23	+0.5
2,539,016	-		Shew_2179	0.24	+0.7
2,539,023	-		Shew_2179	0.24	-0.3
2,539,023	-		Shew_2179	0.24	-0.5
2,539,023	-		Shew_2179	0.24	-0.4
2,539,023	-		Shew_2179	0.24	-1.7
2,539,023	-		Shew_2179	0.24	-1.0
2,539,023	-		Shew_2179	0.24	-0.2
2,539,023	-		Shew_2179	0.24	-0.7
2,539,023	-		Shew_2179	0.24	+0.4
2,539,023	-		Shew_2179	0.24	-0.2
2,539,023	-		Shew_2179	0.24	+0.1
2,539,023	-		Shew_2179	0.24	+0.5
2,539,023	-		Shew_2179	0.24	-0.7
2,539,023	-		Shew_2179	0.24	+0.3
2,539,023	-		Shew_2179	0.24	-0.5
2,539,023	-		Shew_2179	0.24	+0.5
2,539,023	-		Shew_2179	0.24	+0.3
2,539,023	-		Shew_2179	0.24	-0.4
2,539,023	-		Shew_2179	0.24	+0.5
2,539,023	-		Shew_2179	0.24	+0.0
2,539,023	-		Shew_2179	0.24	+0.2
2,539,023	-		Shew_2179	0.24	+0.3
2,539,023	-		Shew_2179	0.24	+0.3
2,539,023	-		Shew_2179	0.24	+1.3
2,539,023	-		Shew_2179	0.24	+1.0
2,539,031	+		Shew_2179	0.25	+1.0
2,539,039	-		Shew_2179	0.26	-0.5
2,539,065	-		Shew_2179	0.29	+0.5
2,539,069	+		Shew_2179	0.29	+0.7
2,539,077	-		Shew_2179	0.30	-0.0
2,539,098	+		Shew_2179	0.32	+0.4
2,539,103	+		Shew_2179	0.33	+0.3
2,539,124	-		Shew_2179	0.35	-0.1
2,539,151	-		Shew_2179	0.38	-0.0
2,539,186	-		Shew_2179	0.42	+0.2
2,539,186	-		Shew_2179	0.42	+0.4
2,539,186	-		Shew_2179	0.42	-0.6
2,539,229	+		Shew_2179	0.47	+0.2
2,539,232	+		Shew_2179	0.47	+0.9
2,539,240	-		Shew_2179	0.48	+0.0
2,539,264	-		Shew_2179	0.51	+0.7
2,539,272	+		Shew_2179	0.51	+0.3
2,539,273	+		Shew_2179	0.52	+0.7
2,539,273	-		Shew_2179	0.52	-0.2
2,539,273	+		Shew_2179	0.52	+0.3