Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1681 and Shew_1682 are separated by 42 nucleotides Shew_1682 and Shew_1683 are separated by 30 nucleotides Shew_1683 and Shew_1684 are separated by 31 nucleotides Shew_1684 and Shew_1685 are separated by 347 nucleotides
Shew_1681: Shew_1681 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,931,402 to 1,932,892
_1681
Shew_1682: Shew_1682 - ribonuclease H (RefSeq), at 1,932,935 to 1,933,699
_1682
Shew_1683: Shew_1683 - hypothetical protein (RefSeq), at 1,933,730 to 1,934,305
_1683
Shew_1684: Shew_1684 - lysine exporter protein LysE/YggA (RefSeq), at 1,934,337 to 1,934,933
_1684
Shew_1685: Shew_1685 - collagenase (RefSeq), at 1,935,281 to 1,938,187
_1685
Position (kb) 1933
1934
1935 Strain fitness (log2 ratio) -1
0
1 at 1933.016 kb on + strand, within Shew_1682 at 1933.258 kb on + strand, within Shew_1682 at 1933.929 kb on - strand, within Shew_1683 at 1934.472 kb on + strand, within Shew_1684 at 1934.480 kb on - strand, within Shew_1684 at 1934.480 kb on - strand, within Shew_1684 at 1934.693 kb on + strand, within Shew_1684 at 1934.759 kb on + strand, within Shew_1684
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 1,933,016 + Shew_1682 0.11 +0.3 1,933,258 + Shew_1682 0.42 +0.1 1,933,929 - Shew_1683 0.35 -0.7 1,934,472 + Shew_1684 0.23 -0.9 1,934,480 - Shew_1684 0.24 -0.5 1,934,480 - Shew_1684 0.24 -0.1 1,934,693 + Shew_1684 0.60 +0.8 1,934,759 + Shew_1684 0.71 +0.0
Or see this region's nucleotide sequence