Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1217 and Shew_1218 are separated by 306 nucleotides Shew_1218 and Shew_R0026 are separated by 213 nucleotides Shew_R0026 and Shew_R0027 are separated by 21 nucleotides Shew_R0027 and Shew_R0028 are separated by 37 nucleotides Shew_R0028 and Shew_R0029 are separated by 25 nucleotides Shew_R0029 and Shew_R0030 are separated by 53 nucleotides Shew_R0030 and Shew_R0031 are separated by 8 nucleotides Shew_R0031 and Shew_1219 are separated by 529 nucleotides
Shew_1217: Shew_1217 - alanyl-tRNA synthetase (RefSeq), at 1,412,779 to 1,415,403
_1217
Shew_1218: Shew_1218 - carbon storage regulator, CsrA (RefSeq), at 1,415,710 to 1,415,907
_1218
Shew_R0026: Shew_R0026 - tRNA-Ser (RefSeq), at 1,416,121 to 1,416,212
_R0026
Shew_R0027: Shew_R0027 - tRNA-Arg (RefSeq), at 1,416,234 to 1,416,310
_R0027
Shew_R0028: Shew_R0028 - tRNA-Arg (RefSeq), at 1,416,348 to 1,416,424
_R0028
Shew_R0029: Shew_R0029 - tRNA-Arg (RefSeq), at 1,416,450 to 1,416,526
_R0029
Shew_R0030: Shew_R0030 - tRNA-Arg (RefSeq), at 1,416,580 to 1,416,656
_R0030
Shew_R0031: Shew_R0031 - tRNA-Ser (RefSeq), at 1,416,665 to 1,416,756
_R0031
Shew_1219: Shew_1219 - sodium pump decarboxylases, gamma subunit (RefSeq), at 1,417,286 to 1,417,534
_1219
Position (kb)
1416
1417 Strain fitness (log2 ratio)
-2
-1
0
1 at 1415.469 kb on - strand at 1415.924 kb on + strand at 1416.971 kb on + strand
Per-strain Table
Or see this region's nucleotide sequence