Strain Fitness in Shewanella loihica PV-4 around Shew_R0027

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1217 and Shew_1218 are separated by 306 nucleotidesShew_1218 and Shew_R0026 are separated by 213 nucleotidesShew_R0026 and Shew_R0027 are separated by 21 nucleotidesShew_R0027 and Shew_R0028 are separated by 37 nucleotidesShew_R0028 and Shew_R0029 are separated by 25 nucleotidesShew_R0029 and Shew_R0030 are separated by 53 nucleotidesShew_R0030 and Shew_R0031 are separated by 8 nucleotidesShew_R0031 and Shew_1219 are separated by 529 nucleotides Shew_1217: Shew_1217 - alanyl-tRNA synthetase (RefSeq), at 1,412,779 to 1,415,403 _1217 Shew_1218: Shew_1218 - carbon storage regulator, CsrA (RefSeq), at 1,415,710 to 1,415,907 _1218 Shew_R0026: Shew_R0026 - tRNA-Ser (RefSeq), at 1,416,121 to 1,416,212 _R0026 Shew_R0027: Shew_R0027 - tRNA-Arg (RefSeq), at 1,416,234 to 1,416,310 _R0027 Shew_R0028: Shew_R0028 - tRNA-Arg (RefSeq), at 1,416,348 to 1,416,424 _R0028 Shew_R0029: Shew_R0029 - tRNA-Arg (RefSeq), at 1,416,450 to 1,416,526 _R0029 Shew_R0030: Shew_R0030 - tRNA-Arg (RefSeq), at 1,416,580 to 1,416,656 _R0030 Shew_R0031: Shew_R0031 - tRNA-Ser (RefSeq), at 1,416,665 to 1,416,756 _R0031 Shew_1219: Shew_1219 - sodium pump decarboxylases, gamma subunit (RefSeq), at 1,417,286 to 1,417,534 _1219 Position (kb) 1416 1417Strain fitness (log2 ratio) -2 -1 0 1at 1415.469 kb on - strandat 1415.924 kb on + strandat 1416.971 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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1,415,469 - +0.2
1,415,924 + -2.0
1,416,971 + -0.2

Or see this region's nucleotide sequence