Strain Fitness in Shewanella loihica PV-4 around Shew_0929

Experiment: 5-Hydroxymethylfurfural 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 10 mM
1,060,983	+				-1.0
1,060,983	+				+0.0
1,060,991	-				-0.0
1,061,027	-				+0.5
1,061,098	-				-0.5
1,061,133	-				-0.1
1,061,540	-		Shew_0929	0.16	+0.8
1,061,567	+		Shew_0929	0.17	+0.7
1,061,654	-		Shew_0929	0.20	+0.2
1,061,868	+		Shew_0929	0.27	-0.7
1,061,876	-		Shew_0929	0.27	+0.3
1,061,883	+		Shew_0929	0.28	+0.7
1,061,883	+		Shew_0929	0.28	+0.7
1,061,891	-		Shew_0929	0.28	+0.3
1,061,891	-		Shew_0929	0.28	+0.3
1,061,898	+		Shew_0929	0.28	+0.2
1,061,974	-		Shew_0929	0.31	+0.6
1,061,979	+		Shew_0929	0.31	-0.1
1,061,979	+		Shew_0929	0.31	+0.9
1,062,036	-		Shew_0929	0.33	-0.5
1,062,060	+		Shew_0929	0.33	+0.2
1,062,074	+		Shew_0929	0.34	-0.2
1,062,077	-		Shew_0929	0.34	+1.7
1,062,084	+		Shew_0929	0.34	+0.0
1,062,092	-		Shew_0929	0.34	+0.1
1,062,112	+		Shew_0929	0.35	+0.2
1,062,140	-		Shew_0929	0.36	+0.2
1,062,226	-		Shew_0929	0.39	+0.1
1,062,235	+		Shew_0929	0.39	+0.3
1,062,266	-		Shew_0929	0.40	+0.5
1,062,273	+		Shew_0929	0.40	-1.0
1,062,273	+		Shew_0929	0.40	+0.5
1,062,279	+		Shew_0929	0.40	+0.2
1,062,281	-		Shew_0929	0.41	+0.4
1,062,301	-		Shew_0929	0.41	+0.3
1,062,313	-		Shew_0929	0.42	-0.0
1,062,375	+		Shew_0929	0.44	-0.2
1,062,375	+		Shew_0929	0.44	+0.1
1,062,375	+		Shew_0929	0.44	-0.1
1,062,383	-		Shew_0929	0.44	+0.3
1,062,383	-		Shew_0929	0.44	+0.1
1,062,424	+		Shew_0929	0.45	-1.3
1,062,432	-		Shew_0929	0.45	+0.5
1,062,434	+		Shew_0929	0.45	+1.3
1,062,440	+		Shew_0929	0.46	+0.3
1,062,440	+		Shew_0929	0.46	+0.3
1,062,440	+		Shew_0929	0.46	+0.5
1,062,440	+		Shew_0929	0.46	+0.1
1,062,440	+		Shew_0929	0.46	-0.1
1,062,441	+		Shew_0929	0.46	+0.1
1,062,448	-		Shew_0929	0.46	-0.8
1,062,448	-		Shew_0929	0.46	+0.2
1,062,467	-		Shew_0929	0.47	-0.2
1,062,539	+		Shew_0929	0.49	+0.0
1,062,609	-		Shew_0929	0.51	+0.5
1,062,637	+		Shew_0929	0.52	+4.9
1,062,716	-		Shew_0929	0.55	+0.1
1,062,796	-		Shew_0929	0.57	+0.8
1,062,802	-		Shew_0929	0.57	-0.8
1,062,802	-		Shew_0929	0.57	-0.0
1,062,818	+		Shew_0929	0.58	+0.3
1,062,821	-		Shew_0929	0.58	-1.2
1,062,821	-		Shew_0929	0.58	+0.4
1,062,826	-		Shew_0929	0.58	-0.4
1,062,826	-		Shew_0929	0.58	+0.5
1,062,826	-		Shew_0929	0.58	+0.7
1,062,855	+		Shew_0929	0.59	+0.1
1,062,951	+		Shew_0929	0.62	+1.1
1,062,951	+		Shew_0929	0.62	+0.8
1,062,951	+		Shew_0929	0.62	+0.7
1,062,951	+		Shew_0929	0.62	+0.9
1,062,951	+		Shew_0929	0.62	-0.0
1,062,951	+		Shew_0929	0.62	+0.7
1,062,951	+		Shew_0929	0.62	+0.4
1,062,951	+		Shew_0929	0.62	+0.7
1,062,951	+		Shew_0929	0.62	+0.4
1,062,951	+		Shew_0929	0.62	-0.4
1,062,959	-		Shew_0929	0.63	-0.7
1,062,959	-		Shew_0929	0.63	-0.6
1,062,959	+		Shew_0929	0.63	+0.0
1,062,959	+		Shew_0929	0.63	-0.9
1,062,961	+		Shew_0929	0.63	+0.3
1,062,967	-		Shew_0929	0.63	+1.0
1,062,967	-		Shew_0929	0.63	+0.6
1,062,967	-		Shew_0929	0.63	-0.5
1,062,969	+		Shew_0929	0.63	+0.1
1,062,978	+		Shew_0929	0.63	-0.2
1,063,011	+		Shew_0929	0.64	-0.4
1,063,024	-		Shew_0929	0.65	+1.0
1,063,050	+		Shew_0929	0.65	+0.4
1,063,050	+		Shew_0929	0.65	+0.3
1,063,054	-		Shew_0929	0.66	+0.5
1,063,056	-		Shew_0929	0.66	+1.4
1,063,056	-		Shew_0929	0.66	+0.7
1,063,058	-		Shew_0929	0.66	+0.3
1,063,058	-		Shew_0929	0.66	+0.3
1,063,058	-		Shew_0929	0.66	+0.3
1,063,058	-		Shew_0929	0.66	+0.2
1,063,060	+		Shew_0929	0.66	+0.2
1,063,062	+		Shew_0929	0.66	+0.2
1,063,078	-		Shew_0929	0.66	+0.1
1,063,080	+		Shew_0929	0.66	+0.9
1,063,118	+		Shew_0929	0.68	-0.4
1,063,118	+		Shew_0929	0.68	-0.0
1,063,126	-		Shew_0929	0.68	+0.3
1,063,151	+		Shew_0929	0.69	+0.7
1,063,151	+		Shew_0929	0.69	-3.9
1,063,151	+		Shew_0929	0.69	-0.1
1,063,151	+		Shew_0929	0.69	+0.4
1,063,151	+		Shew_0929	0.69	-0.2
1,063,159	-		Shew_0929	0.69	+0.5
1,063,159	-		Shew_0929	0.69	-0.1
1,063,159	-		Shew_0929	0.69	+0.5
1,063,174	-		Shew_0929	0.70	+0.0
1,063,174	-		Shew_0929	0.70	-0.8
1,063,181	-		Shew_0929	0.70	+0.2
1,063,181	-		Shew_0929	0.70	-1.2
1,063,205	+		Shew_0929	0.71	-0.5
1,063,205	+		Shew_0929	0.71	+0.3
1,063,213	-		Shew_0929	0.71	-0.2
1,063,226	-		Shew_0929	0.71	+0.3
1,063,226	-		Shew_0929	0.71	-0.1
1,063,226	-		Shew_0929	0.71	-0.0
1,063,228	+		Shew_0929	0.71	-1.4
1,063,255	+		Shew_0929	0.72	+0.1
1,063,263	-		Shew_0929	0.72	+0.6
1,063,263	-		Shew_0929	0.72	-1.4
1,063,314	-		Shew_0929	0.74	+0.0
1,063,333	+		Shew_0929	0.75	+0.3
1,063,333	+		Shew_0929	0.75	-0.2
1,063,333	+		Shew_0929	0.75	+0.7
1,063,333	+		Shew_0929	0.75	+0.4
1,063,333	+		Shew_0929	0.75	+1.7
1,063,410	+		Shew_0929	0.77	-0.1
1,063,415	+		Shew_0929	0.77	-0.5
1,063,418	-		Shew_0929	0.77	+0.9
1,063,423	+		Shew_0929	0.78	+0.3
1,063,423	-		Shew_0929	0.78	+0.4
1,063,431	-		Shew_0929	0.78	+0.0
1,063,433	+		Shew_0929	0.78	+0.1
1,063,448	+		Shew_0929	0.78	+1.3
1,063,457	-		Shew_0929	0.79	+0.2
1,063,464	+		Shew_0929	0.79	+0.6
1,063,469	+		Shew_0929	0.79	+0.5
1,063,477	-		Shew_0929	0.79	-0.2
1,063,477	-		Shew_0929	0.79	+0.3
1,063,484	+		Shew_0929	0.80	-1.2
1,063,485	-		Shew_0929	0.80	+0.1
1,063,492	-		Shew_0929	0.80	+0.2
1,063,494	-		Shew_0929	0.80	+0.0
1,063,504	+		Shew_0929	0.80	+0.8
1,063,512	-		Shew_0929	0.81	-0.2
1,063,514	+		Shew_0929	0.81	+1.4
1,063,514	+		Shew_0929	0.81	-0.7
1,063,514	+		Shew_0929	0.81	+0.2
1,063,514	+		Shew_0929	0.81	+1.2
1,063,514	+		Shew_0929	0.81	+0.3
1,063,514	+		Shew_0929	0.81	+0.8
1,063,514	+		Shew_0929	0.81	-0.2
1,063,514	+		Shew_0929	0.81	-0.3
1,063,514	+		Shew_0929	0.81	+0.3
1,063,514	+		Shew_0929	0.81	-0.4
1,063,514	+		Shew_0929	0.81	-0.2
1,063,514	+		Shew_0929	0.81	-2.2
1,063,514	+		Shew_0929	0.81	+0.4
1,063,514	+		Shew_0929	0.81	-0.2
1,063,522	-		Shew_0929	0.81	+0.6
1,063,522	-		Shew_0929	0.81	-0.8
1,063,522	-		Shew_0929	0.81	+0.5
1,063,522	-		Shew_0929	0.81	+0.5
1,063,522	-		Shew_0929	0.81	+0.2
1,063,522	-		Shew_0929	0.81	+0.0
1,063,522	-		Shew_0929	0.81	-0.1
1,063,522	-		Shew_0929	0.81	-0.8
1,063,522	-		Shew_0929	0.81	+0.5
1,063,522	-		Shew_0929	0.81	+0.3
1,063,522	+		Shew_0929	0.81	+1.8
1,063,522	-		Shew_0929	0.81	-1.1
1,063,522	-		Shew_0929	0.81	+0.8
1,063,530	-		Shew_0929	0.81	+0.1
1,063,531	-		Shew_0929	0.81	-0.7
1,063,541	+		Shew_0929	0.81	-0.0
1,063,547	-		Shew_0929	0.82	+1.6
1,063,549	-		Shew_0929	0.82	-0.3
1,063,549	-		Shew_0929	0.82	-0.2
1,063,549	-		Shew_0929	0.82	+0.3
1,063,549	-		Shew_0929	0.82	+0.3
1,063,549	-		Shew_0929	0.82	+0.8
1,063,576	+		Shew_0929	0.83	+0.3
1,063,638	-		Shew_0929	0.85	+0.3
1,063,652	-		Shew_0929	0.85	-0.2
1,063,830	+				+0.2
1,063,835	+				+0.6
1,063,835	+				-0.1
1,063,835	+				-0.4
1,063,836	-				+0.5
1,063,836	+				+0.7
1,063,836	+				+0.0
1,063,836	+				-0.1
1,063,843	-				+0.0
1,063,845	-				-0.1
1,063,846	+				+0.2
1,063,883	+				-0.9
1,063,895	+				-0.2
1,063,895	+				+0.4
1,063,895	+				+0.2
1,063,895	+				-0.4
1,063,895	+				+0.3
1,063,903	-				+0.3
1,063,903	-				+0.6
1,063,903	-				-1.4
1,063,903	-				+0.2
1,063,903	-				-0.3
1,063,903	-				+0.3
1,063,903	-				+0.6
1,063,903	-				+0.0
1,063,903	-				+0.4
1,063,975	+				+0.4
1,063,984	-				+0.5
1,064,015	-				+0.9
1,064,019	+				+0.2
1,064,019	+				+0.1
1,064,022	+				-0.1
1,064,022	+				+0.1
1,064,025	-				+0.8
1,064,027	-				+1.2
1,064,027	-				+0.6
1,064,032	-				+0.7
1,064,032	-				-0.5
1,064,032	-				-0.0
1,064,044	+				+0.0
1,064,058	+				+0.5
1,064,058	+				-0.2
1,064,058	+				-2.1
1,064,066	-				+0.5
1,064,077	+				+0.5
1,064,089	+				-0.4
1,064,092	-				+0.0
1,064,111	-				+0.3
1,064,141	+				+0.2
1,064,141	+				-0.1
1,064,501	+				-0.8
1,064,646	-		Shew_0930	0.24	+0.1
1,064,706	+		Shew_0930	0.35	+0.2
1,065,056	+				-0.6
1,065,056	+				+0.1
1,065,056	+				-0.2
1,065,064	-				-0.1
1,065,064	-				+0.3
1,065,066	+				+0.5