Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0815 and Shew_0816 are separated by 263 nucleotides Shew_0816 and Shew_0817 are separated by 11 nucleotides Shew_0817 and Shew_0818 are separated by 167 nucleotides
Shew_0815: Shew_0815 - Glucosamine-6-phosphate deaminase (EC 3.5.99.6) <small>(from data)</small>, at 939,182 to 939,988
_0815
Shew_0816: Shew_0816 - hypothetical protein (RefSeq), at 940,252 to 940,788
_0816
Shew_0817: Shew_0817 - cupin 2 domain-containing protein (RefSeq), at 940,800 to 941,117
_0817
Shew_0818: Shew_0818 - peptidase U32 (RefSeq), at 941,285 to 943,198
_0818
Position (kb) 940
941 Strain fitness (log2 ratio) -1
0
1 at 939.369 kb on + strand, within Shew_0815 at 939.615 kb on + strand, within Shew_0815 at 939.623 kb on - strand, within Shew_0815 at 939.787 kb on + strand, within Shew_0815 at 939.789 kb on - strand, within Shew_0815 at 939.809 kb on + strand, within Shew_0815 at 940.489 kb on - strand, within Shew_0816 at 940.722 kb on + strand, within Shew_0816 at 940.773 kb on + strand at 941.015 kb on - strand, within Shew_0817 at 941.637 kb on - strand, within Shew_0818 at 941.743 kb on + strand, within Shew_0818 at 941.762 kb on - strand, within Shew_0818
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 939,369 + Shew_0815 0.23 +1.0 939,615 + Shew_0815 0.54 -0.0 939,623 - Shew_0815 0.55 -0.0 939,787 + Shew_0815 0.75 +0.1 939,789 - Shew_0815 0.75 -0.2 939,809 + Shew_0815 0.78 -0.1 940,489 - Shew_0816 0.44 -1.4 940,722 + Shew_0816 0.88 +0.1 940,773 + -0.4 941,015 - Shew_0817 0.68 +0.0 941,637 - Shew_0818 0.18 +0.5 941,743 + Shew_0818 0.24 -0.3 941,762 - Shew_0818 0.25 +0.1
Or see this region's nucleotide sequence