Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0794 and Shew_0795 are separated by 27 nucleotides Shew_0795 and Shew_0796 are separated by 302 nucleotides Shew_0796 and Shew_0797 are separated by 103 nucleotides
Shew_0794: Shew_0794 - diguanylate cyclase (RefSeq), at 906,794 to 907,978
_0794
Shew_0795: Shew_0795 - hypothetical protein (RefSeq), at 908,006 to 908,410
_0795
Shew_0796: Shew_0796 - hypothetical protein (RefSeq), at 908,713 to 908,910
_0796
Shew_0797: Shew_0797 - hypothetical protein (RefSeq), at 909,014 to 910,432
_0797
Position (kb) 908
909 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 907.226 kb on + strand, within Shew_0794 at 907.234 kb on - strand, within Shew_0794 at 907.355 kb on - strand, within Shew_0794 at 907.614 kb on + strand, within Shew_0794 at 907.912 kb on + strand at 908.002 kb on - strand at 908.089 kb on + strand, within Shew_0795 at 908.332 kb on + strand, within Shew_0795 at 908.412 kb on + strand at 908.510 kb on - strand at 908.611 kb on - strand at 908.710 kb on + strand at 908.710 kb on + strand at 908.718 kb on - strand at 908.918 kb on + strand at 908.926 kb on - strand at 908.936 kb on + strand at 908.975 kb on - strand at 909.068 kb on + strand at 909.309 kb on + strand, within Shew_0797 at 909.341 kb on + strand, within Shew_0797 at 909.366 kb on + strand, within Shew_0797
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 907,226 + Shew_0794 0.36 +0.5 907,234 - Shew_0794 0.37 +0.5 907,355 - Shew_0794 0.47 -0.7 907,614 + Shew_0794 0.69 +0.2 907,912 + +0.5 908,002 - +0.1 908,089 + Shew_0795 0.20 -0.7 908,332 + Shew_0795 0.80 -1.0 908,412 + -0.4 908,510 - +0.1 908,611 - +0.1 908,710 + +0.4 908,710 + +0.1 908,718 - +0.3 908,918 + -0.3 908,926 - +0.2 908,936 + -2.0 908,975 - -0.6 909,068 + -0.7 909,309 + Shew_0797 0.21 +0.4 909,341 + Shew_0797 0.23 +0.6 909,366 + Shew_0797 0.25 +5.5
Or see this region's nucleotide sequence