Strain Fitness in Shewanella loihica PV-4 around Shew_0741

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0740 and Shew_0741 are separated by 86 nucleotidesShew_0741 and Shew_0742 are separated by 141 nucleotidesShew_0742 and Shew_0743 are separated by 164 nucleotides Shew_0740: Shew_0740 - L-serine dehydratase 1 (RefSeq), at 842,057 to 843,424 _0740 Shew_0741: Shew_0741 - GCN5-related N-acetyltransferase (RefSeq), at 843,511 to 843,954 _0741 Shew_0742: Shew_0742 - hypothetical protein (RefSeq), at 844,096 to 844,401 _0742 Shew_0743: Shew_0743 - sodium:dicarboxylate symporter (RefSeq), at 844,566 to 845,867 _0743 Position (kb) 843 844Strain fitness (log2 ratio) -2 -1 0 1at 842.557 kb on - strand, within Shew_0740at 842.864 kb on - strand, within Shew_0740at 842.984 kb on - strand, within Shew_0740at 843.375 kb on + strandat 843.716 kb on + strand, within Shew_0741at 843.846 kb on + strand, within Shew_0741at 843.874 kb on - strand, within Shew_0741at 843.998 kb on - strandat 844.056 kb on - strandat 844.432 kb on + strandat 844.447 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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842,557 - Shew_0740 0.37 +0.4
842,864 - Shew_0740 0.59 +0.3
842,984 - Shew_0740 0.68 -0.4
843,375 + -0.6
843,716 + Shew_0741 0.46 -2.0
843,846 + Shew_0741 0.75 +0.2
843,874 - Shew_0741 0.82 -0.6
843,998 - +0.2
844,056 - +0.1
844,432 + -0.0
844,447 + -0.0

Or see this region's nucleotide sequence