Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0694 and Shew_0695 are separated by 181 nucleotides Shew_0695 and Shew_0696 are separated by 226 nucleotides Shew_0696 and rihA are separated by 43 nucleotides
Shew_0694: Shew_0694 - hypothetical protein (RefSeq), at 787,511 to 788,452
_0694
Shew_0695: Shew_0695 - hypothetical protein (RefSeq), at 788,634 to 788,849
_0695
Shew_0696: Shew_0696 - ribokinase (RefSeq), at 789,076 to 789,990
_0696
Shew_0697: rihA - ribonucleoside hydrolase 1 (RefSeq), at 790,034 to 791,041
rihA
Position (kb) 789
790 Strain fitness (log2 ratio) -1
0
1 at 788.222 kb on - strand, within Shew_0694 at 788.342 kb on + strand, within Shew_0694 at 788.342 kb on + strand, within Shew_0694 at 788.432 kb on + strand at 788.452 kb on + strand at 788.524 kb on + strand at 788.771 kb on + strand, within Shew_0695 at 789.059 kb on - strand at 789.059 kb on - strand at 789.072 kb on - strand at 789.164 kb on - strand at 789.251 kb on + strand, within Shew_0696 at 789.251 kb on + strand, within Shew_0696 at 789.274 kb on - strand, within Shew_0696 at 789.293 kb on + strand, within Shew_0696 at 789.301 kb on - strand, within Shew_0696 at 789.306 kb on - strand, within Shew_0696 at 789.321 kb on + strand, within Shew_0696 at 789.396 kb on + strand, within Shew_0696 at 789.600 kb on + strand, within Shew_0696 at 789.608 kb on - strand, within Shew_0696 at 789.771 kb on - strand, within Shew_0696 at 789.973 kb on + strand at 790.001 kb on + strand at 790.009 kb on - strand at 790.178 kb on - strand, within rihA at 790.196 kb on + strand, within rihA at 790.250 kb on + strand, within rihA at 790.346 kb on - strand, within rihA at 790.346 kb on - strand, within rihA at 790.382 kb on - strand, within rihA at 790.453 kb on + strand, within rihA at 790.603 kb on + strand, within rihA at 790.611 kb on - strand, within rihA at 790.696 kb on + strand, within rihA
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 788,222 - Shew_0694 0.75 +0.1 788,342 + Shew_0694 0.88 +0.1 788,342 + Shew_0694 0.88 -1.2 788,432 + -0.5 788,452 + -0.1 788,524 + +0.2 788,771 + Shew_0695 0.63 +0.7 789,059 - -0.3 789,059 - +0.2 789,072 - +0.1 789,164 - +0.2 789,251 + Shew_0696 0.19 -0.2 789,251 + Shew_0696 0.19 -0.2 789,274 - Shew_0696 0.22 +0.8 789,293 + Shew_0696 0.24 +0.2 789,301 - Shew_0696 0.25 +0.2 789,306 - Shew_0696 0.25 -1.1 789,321 + Shew_0696 0.27 -0.0 789,396 + Shew_0696 0.35 -1.0 789,600 + Shew_0696 0.57 -0.2 789,608 - Shew_0696 0.58 -0.5 789,771 - Shew_0696 0.76 +0.0 789,973 + +0.3 790,001 + +0.0 790,009 - -0.1 790,178 - rihA Shew_0697 0.14 +0.3 790,196 + rihA Shew_0697 0.16 -1.2 790,250 + rihA Shew_0697 0.21 -1.1 790,346 - rihA Shew_0697 0.31 -0.2 790,346 - rihA Shew_0697 0.31 -0.4 790,382 - rihA Shew_0697 0.35 -1.1 790,453 + rihA Shew_0697 0.42 -0.7 790,603 + rihA Shew_0697 0.56 -0.4 790,611 - rihA Shew_0697 0.57 -0.2 790,696 + rihA Shew_0697 0.66 -0.4
Or see this region's nucleotide sequence