Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0591 and Shew_0592 are separated by 56 nucleotides Shew_0592 and Shew_0593 are separated by 67 nucleotides Shew_0593 and Shew_0594 are separated by 174 nucleotides Shew_0594 and Shew_0595 are separated by 65 nucleotides Shew_0595 and Shew_0596 are separated by 100 nucleotides
Shew_0591: Shew_0591 - glucose-methanol-choline oxidoreductase (RefSeq), at 667,823 to 669,412
_0591
Shew_0592: Shew_0592 - hypothetical protein (RefSeq), at 669,469 to 669,918
_0592
Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896
_0593
Shew_0594: Shew_0594 - hypothetical protein (RefSeq), at 672,071 to 672,271
_0594
Shew_0595: Shew_0595 - hypothetical protein (RefSeq), at 672,337 to 672,648
_0595
Shew_0596: Shew_0596 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 672,749 to 674,671
_0596
Position (kb) 669
670
671
672 Strain fitness (log2 ratio) -2
-1
0
1
2 at 669.071 kb on + strand, within Shew_0591 at 669.247 kb on - strand, within Shew_0591 at 669.341 kb on - strand at 669.525 kb on + strand, within Shew_0592 at 669.596 kb on - strand, within Shew_0592 at 669.658 kb on - strand, within Shew_0592 at 669.933 kb on - strand at 669.953 kb on + strand at 669.966 kb on - strand at 670.058 kb on - strand at 670.069 kb on + strand at 670.092 kb on + strand at 670.125 kb on + strand at 670.554 kb on - strand, within Shew_0593 at 670.700 kb on + strand, within Shew_0593 at 670.806 kb on + strand, within Shew_0593 at 670.814 kb on - strand, within Shew_0593 at 670.814 kb on - strand, within Shew_0593 at 671.040 kb on - strand, within Shew_0593 at 671.169 kb on + strand, within Shew_0593 at 671.181 kb on + strand, within Shew_0593 at 671.595 kb on + strand, within Shew_0593 at 671.603 kb on - strand, within Shew_0593 at 671.603 kb on - strand, within Shew_0593 at 671.730 kb on + strand at 671.739 kb on + strand at 671.954 kb on + strand at 672.136 kb on + strand, within Shew_0594 at 672.136 kb on + strand, within Shew_0594 at 672.219 kb on - strand, within Shew_0594 at 672.267 kb on - strand at 672.516 kb on + strand, within Shew_0595
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 669,071 + Shew_0591 0.78 -0.2 669,247 - Shew_0591 0.90 -0.1 669,341 - +0.4 669,525 + Shew_0592 0.12 +0.7 669,596 - Shew_0592 0.28 +0.4 669,658 - Shew_0592 0.42 +0.0 669,933 - +0.3 669,953 + -0.3 669,966 - -2.2 670,058 - -0.9 670,069 + -0.4 670,092 + +0.7 670,125 + -1.8 670,554 - Shew_0593 0.30 -1.7 670,700 + Shew_0593 0.37 -0.6 670,806 + Shew_0593 0.43 -1.3 670,814 - Shew_0593 0.43 -0.5 670,814 - Shew_0593 0.43 -0.8 671,040 - Shew_0593 0.55 -0.8 671,169 + Shew_0593 0.62 -0.7 671,181 + Shew_0593 0.63 -0.1 671,595 + Shew_0593 0.84 -0.9 671,603 - Shew_0593 0.85 -0.8 671,603 - Shew_0593 0.85 -1.8 671,730 + -0.4 671,739 + -0.2 671,954 + -0.1 672,136 + Shew_0594 0.32 +0.9 672,136 + Shew_0594 0.32 +0.4 672,219 - Shew_0594 0.74 +0.8 672,267 - -0.1 672,516 + Shew_0595 0.57 +1.9
Or see this region's nucleotide sequence