Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0585 and Shew_0586 are separated by 443 nucleotides Shew_0586 and Shew_0587 are separated by 336 nucleotides
Shew_0585: Shew_0585 - cAMP-regulatory protein (RefSeq), at 662,616 to 663,251
_0585
Shew_0586: Shew_0586 - TPR repeat-containing protein (RefSeq), at 663,695 to 664,474
_0586
Shew_0587: Shew_0587 - phosphoribulokinase (RefSeq), at 664,811 to 665,698
_0587
Position (kb) 663
664
665 Strain fitness (log2 ratio) -1
0
1
2
3 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.129 kb on - strand, within Shew_0585 at 663.129 kb on - strand, within Shew_0585 at 663.226 kb on + strand at 663.226 kb on + strand at 663.226 kb on + strand at 663.226 kb on + strand at 663.485 kb on + strand at 663.495 kb on + strand at 663.522 kb on - strand at 663.551 kb on + strand at 663.593 kb on - strand at 663.625 kb on - strand at 663.625 kb on - strand at 663.627 kb on + strand at 663.627 kb on + strand at 663.932 kb on - strand, within Shew_0586 at 664.125 kb on + strand, within Shew_0586 at 664.238 kb on - strand, within Shew_0586 at 664.477 kb on - strand at 664.877 kb on + strand at 664.915 kb on + strand, within Shew_0587 at 665.028 kb on - strand, within Shew_0587 at 665.048 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.061 kb on - strand, within Shew_0587 at 665.061 kb on - strand, within Shew_0587 at 665.068 kb on + strand, within Shew_0587 at 665.142 kb on - strand, within Shew_0587 at 665.142 kb on - strand, within Shew_0587 at 665.266 kb on + strand, within Shew_0587 at 665.308 kb on - strand, within Shew_0587 at 665.407 kb on + strand, within Shew_0587 at 665.423 kb on + strand, within Shew_0587 at 665.431 kb on - strand, within Shew_0587
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 663,121 + Shew_0585 0.79 +0.1 663,121 + Shew_0585 0.79 +3.3 663,121 + Shew_0585 0.79 +3.2 663,121 + Shew_0585 0.79 -0.2 663,121 + Shew_0585 0.79 -1.4 663,129 - Shew_0585 0.81 +1.2 663,129 - Shew_0585 0.81 +1.8 663,226 + +2.7 663,226 + +3.0 663,226 + +2.0 663,226 + +2.2 663,485 + -0.0 663,495 + +0.4 663,522 - -0.1 663,551 + -0.6 663,593 - +0.2 663,625 - -0.2 663,625 - +0.3 663,627 + -0.3 663,627 + +0.1 663,932 - Shew_0586 0.30 -0.1 664,125 + Shew_0586 0.55 -1.7 664,238 - Shew_0586 0.70 -0.2 664,477 - +0.2 664,877 + +0.1 664,915 + Shew_0587 0.12 -0.2 665,028 - Shew_0587 0.24 -0.3 665,048 + Shew_0587 0.27 -0.2 665,053 + Shew_0587 0.27 -0.6 665,053 + Shew_0587 0.27 +0.8 665,053 + Shew_0587 0.27 +0.2 665,053 + Shew_0587 0.27 +0.2 665,061 - Shew_0587 0.28 +1.1 665,061 - Shew_0587 0.28 +0.3 665,068 + Shew_0587 0.29 -0.8 665,142 - Shew_0587 0.37 -0.5 665,142 - Shew_0587 0.37 +0.8 665,266 + Shew_0587 0.51 -0.5 665,308 - Shew_0587 0.56 +0.7 665,407 + Shew_0587 0.67 -0.1 665,423 + Shew_0587 0.69 +0.1 665,431 - Shew_0587 0.70 +0.6
Or see this region's nucleotide sequence