Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0554 and Shew_0555 overlap by 1 nucleotides Shew_0555 and Shew_0556 are separated by 124 nucleotides
Shew_0554: Shew_0554 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 626,221 to 626,928
_0554
Shew_0555: Shew_0555 - MscS mechanosensitive ion channel (RefSeq), at 626,928 to 630,110
_0555
Shew_0556: Shew_0556 - hypothetical protein (RefSeq), at 630,235 to 631,125
_0556
Position (kb) 626
627
628
629
630
631 Strain fitness (log2 ratio) -2
-1
0
1
2 at 626.349 kb on - strand, within Shew_0554 at 626.505 kb on + strand, within Shew_0554 at 626.505 kb on + strand, within Shew_0554 at 627.153 kb on + strand at 627.521 kb on + strand, within Shew_0555 at 627.618 kb on - strand, within Shew_0555 at 627.926 kb on + strand, within Shew_0555 at 628.073 kb on + strand, within Shew_0555 at 628.073 kb on + strand, within Shew_0555 at 628.137 kb on + strand, within Shew_0555 at 628.144 kb on + strand, within Shew_0555 at 628.192 kb on + strand, within Shew_0555 at 628.474 kb on + strand, within Shew_0555 at 628.592 kb on - strand, within Shew_0555 at 628.978 kb on + strand, within Shew_0555 at 629.773 kb on - strand, within Shew_0555 at 629.842 kb on - strand at 629.866 kb on + strand at 630.036 kb on + strand at 630.546 kb on + strand, within Shew_0556 at 630.645 kb on - strand, within Shew_0556 at 630.683 kb on + strand, within Shew_0556
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 626,349 - Shew_0554 0.18 +2.6 626,505 + Shew_0554 0.40 -0.4 626,505 + Shew_0554 0.40 -2.1 627,153 + -0.5 627,521 + Shew_0555 0.19 -0.2 627,618 - Shew_0555 0.22 -1.1 627,926 + Shew_0555 0.31 -0.8 628,073 + Shew_0555 0.36 -0.9 628,073 + Shew_0555 0.36 +1.0 628,137 + Shew_0555 0.38 -2.1 628,144 + Shew_0555 0.38 -1.3 628,192 + Shew_0555 0.40 -1.1 628,474 + Shew_0555 0.49 -0.1 628,592 - Shew_0555 0.52 +1.3 628,978 + Shew_0555 0.64 -1.9 629,773 - Shew_0555 0.89 -0.5 629,842 - -0.6 629,866 + -1.4 630,036 + +1.0 630,546 + Shew_0556 0.35 -0.0 630,645 - Shew_0556 0.46 +0.0 630,683 + Shew_0556 0.50 -0.3
Or see this region's nucleotide sequence