Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0534 and Shew_0535 are separated by 72 nucleotides Shew_0535 and Shew_0536 are separated by 195 nucleotides Shew_0536 and Shew_0537 are separated by 287 nucleotides Shew_0537 and Shew_0538 are separated by 181 nucleotides Shew_0538 and Shew_0539 are separated by 18 nucleotides
Shew_0534: Shew_0534 - major facilitator transporter (RefSeq), at 606,789 to 608,156
_0534
Shew_0535: Shew_0535 - single-strand binding protein (RefSeq), at 608,229 to 608,891
_0535
Shew_0536: Shew_0536 - tRNA-dihydrouridine synthase A (RefSeq), at 609,087 to 610,076
_0536
Shew_0537: Shew_0537 - hypothetical protein (RefSeq), at 610,364 to 610,642
_0537
Shew_0538: Shew_0538 - phage shock protein C, PspC (RefSeq), at 610,824 to 611,030
_0538
Shew_0539: Shew_0539 - hypothetical protein (RefSeq), at 611,049 to 611,408
_0539
Position (kb) 609
610
611 Strain fitness (log2 ratio) -2
-1
0
1
2 at 608.962 kb on - strand at 608.972 kb on - strand at 608.990 kb on + strand at 609.203 kb on + strand, within Shew_0536 at 609.725 kb on + strand, within Shew_0536 at 609.743 kb on - strand, within Shew_0536 at 609.743 kb on - strand, within Shew_0536 at 609.770 kb on - strand, within Shew_0536 at 609.780 kb on - strand, within Shew_0536 at 610.425 kb on - strand, within Shew_0537 at 610.714 kb on - strand at 610.745 kb on + strand at 610.745 kb on + strand at 610.745 kb on + strand at 610.745 kb on + strand at 610.753 kb on - strand at 610.753 kb on - strand at 610.879 kb on + strand, within Shew_0538
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 608,962 - -0.1 608,972 - +0.1 608,990 + -0.0 609,203 + Shew_0536 0.12 -1.9 609,725 + Shew_0536 0.64 +0.0 609,743 - Shew_0536 0.66 +2.1 609,743 - Shew_0536 0.66 +0.6 609,770 - Shew_0536 0.69 +0.8 609,780 - Shew_0536 0.70 +0.2 610,425 - Shew_0537 0.22 -0.6 610,714 - -0.7 610,745 + +0.2 610,745 + -1.1 610,745 + +0.0 610,745 + -0.3 610,753 - +0.4 610,753 - -0.5 610,879 + Shew_0538 0.27 -0.6
Or see this region's nucleotide sequence