Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0496 and Shew_0497 are separated by 892 nucleotides Shew_0497 and Shew_0498 are separated by 5 nucleotides Shew_0498 and Shew_0499 are separated by 145 nucleotides
Shew_0496: Shew_0496 - amino acid carrier protein (RefSeq), at 553,040 to 554,413
_0496
Shew_0497: Shew_0497 - putative sulfate transporter YchM (RefSeq), at 555,306 to 557,003
_0497
Shew_0498: Shew_0498 - flavoprotein oxygenase (RefSeq), at 557,009 to 557,638
_0498
Shew_0499: Shew_0499 - Xaa-Pro aminopeptidase family enzyme (RefSeq), at 557,784 to 559,136
_0499
Position (kb) 555
556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.450 kb on + strand at 554.539 kb on - strand at 554.573 kb on + strand at 554.670 kb on + strand at 554.737 kb on + strand at 555.009 kb on + strand at 555.036 kb on + strand at 555.049 kb on - strand at 555.049 kb on - strand at 555.202 kb on - strand at 555.569 kb on - strand, within Shew_0497 at 555.742 kb on + strand, within Shew_0497 at 555.787 kb on + strand, within Shew_0497 at 555.793 kb on - strand, within Shew_0497 at 555.809 kb on - strand, within Shew_0497 at 555.841 kb on + strand, within Shew_0497 at 556.026 kb on - strand, within Shew_0497 at 556.082 kb on + strand, within Shew_0497 at 556.218 kb on - strand, within Shew_0497 at 556.239 kb on - strand, within Shew_0497 at 556.241 kb on + strand, within Shew_0497 at 556.262 kb on + strand, within Shew_0497 at 556.332 kb on + strand, within Shew_0497 at 556.609 kb on + strand, within Shew_0497 at 556.609 kb on + strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 557.090 kb on - strand, within Shew_0498 at 557.102 kb on - strand, within Shew_0498 at 557.170 kb on + strand, within Shew_0498 at 557.178 kb on - strand, within Shew_0498 at 557.453 kb on + strand, within Shew_0498 at 557.885 kb on - strand at 558.001 kb on + strand, within Shew_0499
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 554,450 + -0.7 554,539 - +0.9 554,573 + +0.3 554,670 + -0.6 554,737 + +0.4 555,009 + +0.3 555,036 + +0.4 555,049 - +0.5 555,049 - +0.5 555,202 - -0.3 555,569 - Shew_0497 0.15 -0.2 555,742 + Shew_0497 0.26 +2.3 555,787 + Shew_0497 0.28 +0.1 555,793 - Shew_0497 0.29 -0.1 555,809 - Shew_0497 0.30 -0.2 555,841 + Shew_0497 0.32 -0.3 556,026 - Shew_0497 0.42 -0.3 556,082 + Shew_0497 0.46 +0.1 556,218 - Shew_0497 0.54 -0.9 556,239 - Shew_0497 0.55 -0.1 556,241 + Shew_0497 0.55 -0.4 556,262 + Shew_0497 0.56 -1.0 556,332 + Shew_0497 0.60 -0.8 556,609 + Shew_0497 0.77 -0.8 556,609 + Shew_0497 0.77 +0.7 556,617 - Shew_0497 0.77 -0.2 556,617 - Shew_0497 0.77 +0.1 556,617 - Shew_0497 0.77 -1.8 556,617 - Shew_0497 0.77 +0.6 556,617 - Shew_0497 0.77 +0.5 557,090 - Shew_0498 0.13 -0.6 557,102 - Shew_0498 0.15 -0.4 557,170 + Shew_0498 0.26 +0.0 557,178 - Shew_0498 0.27 +0.2 557,453 + Shew_0498 0.70 +0.3 557,885 - -0.2 558,001 + Shew_0499 0.16 +0.2
Or see this region's nucleotide sequence