Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0490 and Shew_0491 are separated by 81 nucleotides Shew_0491 and Shew_0492 are separated by 129 nucleotides
Shew_0490: Shew_0490 - peptidase S9 prolyl oligopeptidase (RefSeq), at 546,050 to 548,077
_0490
Shew_0491: Shew_0491 - hypothetical protein (RefSeq), at 548,159 to 548,413
_0491
Shew_0492: Shew_0492 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 548,543 to 550,135
_0492
Position (kb) 548
549 Strain fitness (log2 ratio) -1
0
1 at 547.243 kb on + strand, within Shew_0490 at 547.313 kb on - strand, within Shew_0490 at 547.474 kb on - strand, within Shew_0490 at 547.591 kb on + strand, within Shew_0490 at 547.599 kb on - strand, within Shew_0490 at 547.599 kb on - strand, within Shew_0490 at 547.621 kb on + strand, within Shew_0490 at 547.809 kb on + strand, within Shew_0490 at 547.878 kb on + strand at 547.922 kb on + strand at 547.935 kb on - strand at 547.935 kb on - strand at 548.195 kb on - strand, within Shew_0491 at 548.246 kb on + strand, within Shew_0491 at 548.370 kb on + strand, within Shew_0491 at 548.580 kb on + strand at 548.667 kb on - strand at 548.736 kb on + strand, within Shew_0492 at 548.870 kb on - strand, within Shew_0492 at 548.951 kb on + strand, within Shew_0492 at 549.056 kb on + strand, within Shew_0492 at 549.130 kb on + strand, within Shew_0492 at 549.294 kb on + strand, within Shew_0492 at 549.307 kb on + strand, within Shew_0492
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 547,243 + Shew_0490 0.59 -1.7 547,313 - Shew_0490 0.62 -1.3 547,474 - Shew_0490 0.70 +0.1 547,591 + Shew_0490 0.76 +0.2 547,599 - Shew_0490 0.76 +0.0 547,599 - Shew_0490 0.76 -0.5 547,621 + Shew_0490 0.77 +0.3 547,809 + Shew_0490 0.87 -0.7 547,878 + -0.5 547,922 + +0.3 547,935 - +0.4 547,935 - +0.4 548,195 - Shew_0491 0.14 -0.5 548,246 + Shew_0491 0.34 -0.3 548,370 + Shew_0491 0.83 -1.3 548,580 + +0.4 548,667 - -0.3 548,736 + Shew_0492 0.12 -0.3 548,870 - Shew_0492 0.21 -0.1 548,951 + Shew_0492 0.26 +0.1 549,056 + Shew_0492 0.32 +0.0 549,130 + Shew_0492 0.37 +0.3 549,294 + Shew_0492 0.47 +0.2 549,307 + Shew_0492 0.48 +0.1
Or see this region's nucleotide sequence