Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0393 and Shew_0394 are separated by 32 nucleotides Shew_0394 and Shew_0395 are separated by 73 nucleotides Shew_0395 and Shew_0396 are separated by 89 nucleotides Shew_0396 and Shew_0397 are separated by 14 nucleotides
Shew_0393: Shew_0393 - type II secretion system protein (RefSeq), at 444,217 to 445,434
_0393
Shew_0394: Shew_0394 - hypothetical protein (RefSeq), at 445,467 to 445,958
_0394
Shew_0395: Shew_0395 - methylation site containing protein (RefSeq), at 446,032 to 446,667
_0395
Shew_0396: Shew_0396 - methylation site containing protein (RefSeq), at 446,757 to 447,266
_0396
Shew_0397: Shew_0397 - methylation site containing protein (RefSeq), at 447,281 to 447,772
_0397
Position (kb) 446
447 Strain fitness (log2 ratio) -1
0
1 at 445.058 kb on + strand, within Shew_0393 at 445.066 kb on - strand, within Shew_0393 at 445.165 kb on - strand, within Shew_0393 at 445.221 kb on - strand, within Shew_0393 at 445.383 kb on + strand at 445.456 kb on + strand at 445.739 kb on + strand, within Shew_0394 at 445.976 kb on - strand at 446.335 kb on + strand, within Shew_0395 at 446.641 kb on + strand at 446.781 kb on - strand at 447.023 kb on - strand, within Shew_0396 at 447.033 kb on - strand, within Shew_0396 at 447.144 kb on - strand, within Shew_0396 at 447.229 kb on + strand at 447.548 kb on + strand, within Shew_0397
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 445,058 + Shew_0393 0.69 -0.1 445,066 - Shew_0393 0.70 +0.3 445,165 - Shew_0393 0.78 +0.1 445,221 - Shew_0393 0.82 +0.4 445,383 + +0.3 445,456 + -0.1 445,739 + Shew_0394 0.55 +0.6 445,976 - -0.6 446,335 + Shew_0395 0.48 -0.7 446,641 + +0.1 446,781 - +0.8 447,023 - Shew_0396 0.52 -0.9 447,033 - Shew_0396 0.54 -0.1 447,144 - Shew_0396 0.76 +0.4 447,229 + -0.6 447,548 + Shew_0397 0.54 -0.1
Or see this region's nucleotide sequence