Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0382 and Shew_0383 are separated by 179 nucleotides Shew_0383 and Shew_0384 are separated by 174 nucleotides
Shew_0382: Shew_0382 - nuclease (RefSeq), at 431,735 to 432,505
_0382
Shew_0383: Shew_0383 - malate dehydrogenase (RefSeq), at 432,685 to 433,932
_0383
Shew_0384: Shew_0384 - regulatory protein CsrD (RefSeq), at 434,107 to 436,017
_0384
Position (kb) 432
433
434 Strain fitness (log2 ratio) -2
-1
0
1 at 431.765 kb on - strand at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 432.098 kb on - strand, within Shew_0382 at 432.583 kb on + strand at 432.591 kb on - strand at 432.792 kb on + strand at 433.246 kb on + strand, within Shew_0383 at 433.254 kb on - strand, within Shew_0383 at 433.498 kb on + strand, within Shew_0383 at 433.817 kb on + strand at 433.875 kb on - strand at 433.901 kb on + strand at 433.909 kb on - strand at 434.583 kb on + strand, within Shew_0384 at 434.662 kb on + strand, within Shew_0384 at 434.670 kb on - strand, within Shew_0384 at 434.670 kb on - strand, within Shew_0384 at 434.908 kb on - strand, within Shew_0384
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 431,765 - -0.6 431,928 + Shew_0382 0.25 +0.4 431,928 + Shew_0382 0.25 -0.8 431,928 + Shew_0382 0.25 +0.1 431,928 + Shew_0382 0.25 +0.3 431,928 + Shew_0382 0.25 -0.2 431,928 + Shew_0382 0.25 -0.1 431,936 - Shew_0382 0.26 -0.1 431,936 - Shew_0382 0.26 +0.3 431,936 - Shew_0382 0.26 -1.1 431,936 - Shew_0382 0.26 +0.9 431,936 - Shew_0382 0.26 -0.1 431,936 - Shew_0382 0.26 +0.0 431,936 - Shew_0382 0.26 -0.1 432,098 - Shew_0382 0.47 +0.4 432,583 + -1.2 432,591 - -1.8 432,792 + -0.8 433,246 + Shew_0383 0.45 -1.1 433,254 - Shew_0383 0.46 -0.5 433,498 + Shew_0383 0.65 -2.2 433,817 + -1.0 433,875 - -2.6 433,901 + -0.1 433,909 - -0.0 434,583 + Shew_0384 0.25 -1.4 434,662 + Shew_0384 0.29 -0.8 434,670 - Shew_0384 0.29 -0.7 434,670 - Shew_0384 0.29 +0.9 434,908 - Shew_0384 0.42 -1.1
Or see this region's nucleotide sequence