Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0350 and Shew_0351 are separated by 28 nucleotides Shew_0351 and Shew_0352 are separated by 117 nucleotides Shew_0352 and Shew_0353 are separated by 2 nucleotides
Shew_0350: Shew_0350 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 399,422 to 400,225
_0350
Shew_0351: Shew_0351 - TPR repeat-containing protein (RefSeq), at 400,254 to 400,946
_0351
Shew_0352: Shew_0352 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 401,064 to 401,711
_0352
Shew_0353: Shew_0353 - polysulphide reductase, NrfD (RefSeq), at 401,714 to 402,661
_0353
Position (kb) 401
402 Strain fitness (log2 ratio) -2
-1
0
1 at 400.107 kb on - strand, within Shew_0350 at 400.146 kb on - strand at 400.284 kb on + strand at 400.381 kb on + strand, within Shew_0351 at 400.545 kb on + strand, within Shew_0351 at 400.553 kb on - strand, within Shew_0351 at 400.553 kb on - strand, within Shew_0351 at 400.553 kb on - strand, within Shew_0351 at 400.564 kb on + strand, within Shew_0351 at 400.564 kb on + strand, within Shew_0351 at 400.572 kb on - strand, within Shew_0351 at 400.574 kb on + strand, within Shew_0351 at 400.855 kb on - strand, within Shew_0351 at 400.900 kb on + strand at 400.903 kb on - strand at 400.905 kb on + strand at 400.941 kb on + strand at 401.073 kb on + strand at 401.133 kb on - strand, within Shew_0352 at 401.237 kb on - strand, within Shew_0352 at 401.538 kb on - strand, within Shew_0352 at 401.550 kb on + strand, within Shew_0352 at 401.653 kb on - strand at 401.686 kb on - strand at 401.880 kb on - strand, within Shew_0353 at 401.943 kb on - strand, within Shew_0353 at 402.129 kb on - strand, within Shew_0353 at 402.129 kb on - strand, within Shew_0353 at 402.632 kb on - strand at 402.641 kb on + strand at 402.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 400,107 - Shew_0350 0.85 +0.5 400,146 - +0.0 400,284 + +0.1 400,381 + Shew_0351 0.18 -0.2 400,545 + Shew_0351 0.42 -0.2 400,553 - Shew_0351 0.43 +0.1 400,553 - Shew_0351 0.43 +0.3 400,553 - Shew_0351 0.43 -0.0 400,564 + Shew_0351 0.45 -0.5 400,564 + Shew_0351 0.45 -0.6 400,572 - Shew_0351 0.46 +0.0 400,574 + Shew_0351 0.46 +0.2 400,855 - Shew_0351 0.87 -0.1 400,900 + -0.2 400,903 - +0.1 400,905 + +0.1 400,941 + -0.9 401,073 + +0.2 401,133 - Shew_0352 0.11 -0.5 401,237 - Shew_0352 0.27 +0.3 401,538 - Shew_0352 0.73 -1.2 401,550 + Shew_0352 0.75 -2.1 401,653 - +0.2 401,686 - -1.6 401,880 - Shew_0353 0.18 +0.3 401,943 - Shew_0353 0.24 -0.9 402,129 - Shew_0353 0.44 +0.3 402,129 - Shew_0353 0.44 -0.0 402,632 - -0.0 402,641 + -0.2 402,702 + +0.1
Or see this region's nucleotide sequence