Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0341 and Shew_0342 are separated by 50 nucleotides Shew_0342 and Shew_0343 are separated by 229 nucleotides Shew_0343 and Shew_0344 are separated by 417 nucleotides
Shew_0341: Shew_0341 - TonB-dependent receptor (RefSeq), at 387,111 to 389,840
_0341
Shew_0342: Shew_0342 - hypothetical protein (RefSeq), at 389,891 to 390,427
_0342
Shew_0343: Shew_0343 - hypothetical protein (RefSeq), at 390,657 to 391,235
_0343
Shew_0344: Shew_0344 - Na+/H+ antiporter NhaC (RefSeq), at 391,653 to 393,173
_0344
Position (kb) 390
391
392 Strain fitness (log2 ratio) -1
0
1 at 389.697 kb on - strand at 389.815 kb on - strand at 390.008 kb on - strand, within Shew_0342 at 390.049 kb on + strand, within Shew_0342 at 390.088 kb on + strand, within Shew_0342 at 390.294 kb on - strand, within Shew_0342 at 390.307 kb on + strand, within Shew_0342 at 390.388 kb on + strand at 390.396 kb on - strand at 390.564 kb on - strand at 390.634 kb on - strand at 390.711 kb on - strand at 391.047 kb on - strand, within Shew_0343 at 391.066 kb on + strand, within Shew_0343 at 392.110 kb on - strand, within Shew_0344
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 389,697 - -0.7 389,815 - +0.2 390,008 - Shew_0342 0.22 +1.3 390,049 + Shew_0342 0.29 +1.2 390,088 + Shew_0342 0.37 +1.4 390,294 - Shew_0342 0.75 +1.0 390,307 + Shew_0342 0.77 +0.3 390,388 + +1.3 390,396 - -0.0 390,564 - -0.7 390,634 - +0.1 390,711 - +0.3 391,047 - Shew_0343 0.67 -0.7 391,066 + Shew_0343 0.71 -1.1 392,110 - Shew_0344 0.30 +0.1
Or see this region's nucleotide sequence