Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0274 and Shew_0275 are separated by 41 nucleotides Shew_0275 and Shew_0276 are separated by 5 nucleotides
Shew_0274: Shew_0274 - hypothetical protein (RefSeq), at 291,207 to 292,340
_0274
Shew_0275: Shew_0275 - tetraheme cytochrome c, putative (RefSeq), at 292,382 to 292,750
_0275
Shew_0276: Shew_0276 - flavocytochrome c (RefSeq), at 292,756 to 294,273
_0276
Position (kb) 292
293 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 291.440 kb on + strand, within Shew_0274 at 291.511 kb on + strand, within Shew_0274 at 291.530 kb on + strand, within Shew_0274 at 291.633 kb on + strand, within Shew_0274 at 291.701 kb on - strand, within Shew_0274 at 291.748 kb on - strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274 at 292.429 kb on - strand, within Shew_0275 at 292.711 kb on + strand, within Shew_0275 at 292.762 kb on - strand at 292.762 kb on - strand at 292.877 kb on + strand at 292.973 kb on - strand, within Shew_0276 at 292.973 kb on - strand, within Shew_0276 at 293.222 kb on + strand, within Shew_0276 at 293.276 kb on + strand, within Shew_0276 at 293.396 kb on - strand, within Shew_0276 at 293.525 kb on - strand, within Shew_0276 at 293.530 kb on - strand, within Shew_0276 at 293.604 kb on - strand, within Shew_0276 at 293.604 kb on - strand, within Shew_0276 at 293.649 kb on + strand, within Shew_0276 at 293.649 kb on + strand, within Shew_0276 at 293.657 kb on - strand, within Shew_0276 at 293.664 kb on + strand, within Shew_0276 at 293.745 kb on + strand, within Shew_0276
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 291,440 + Shew_0274 0.21 +0.2 291,511 + Shew_0274 0.27 +0.1 291,530 + Shew_0274 0.28 -0.4 291,633 + Shew_0274 0.38 +1.3 291,701 - Shew_0274 0.44 +5.4 291,748 - Shew_0274 0.48 +0.5 291,873 + Shew_0274 0.59 +0.1 291,873 + Shew_0274 0.59 -0.6 291,873 + Shew_0274 0.59 -0.0 291,881 - Shew_0274 0.59 +0.3 291,881 - Shew_0274 0.59 +0.9 292,429 - Shew_0275 0.13 -0.1 292,711 + Shew_0275 0.89 -2.0 292,762 - +0.0 292,762 - -0.5 292,877 + +0.0 292,973 - Shew_0276 0.14 -0.3 292,973 - Shew_0276 0.14 -0.6 293,222 + Shew_0276 0.31 -0.0 293,276 + Shew_0276 0.34 +0.7 293,396 - Shew_0276 0.42 -0.5 293,525 - Shew_0276 0.51 -0.0 293,530 - Shew_0276 0.51 +0.0 293,604 - Shew_0276 0.56 -0.4 293,604 - Shew_0276 0.56 +0.5 293,649 + Shew_0276 0.59 +0.2 293,649 + Shew_0276 0.59 +0.4 293,657 - Shew_0276 0.59 +4.0 293,664 + Shew_0276 0.60 +0.3 293,745 + Shew_0276 0.65 +0.3
Or see this region's nucleotide sequence