Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0253 and Shew_0254 are separated by 19 nucleotides Shew_0254 and Shew_0255 are separated by 131 nucleotides Shew_0255 and Shew_0256 are separated by 528 nucleotides
Shew_0253: Shew_0253 - secretion protein HlyD family protein (RefSeq), at 271,884 to 272,990
_0253
Shew_0254: Shew_0254 - hypothetical protein (RefSeq), at 273,010 to 273,519
_0254
Shew_0255: Shew_0255 - ion transport 2 domain-containing protein (RefSeq), at 273,651 to 274,331
_0255
Shew_0256: Shew_0256 - hypothetical protein (RefSeq), at 274,860 to 275,438
_0256
Position (kb) 273
274
275 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 272.669 kb on - strand, within Shew_0253 at 272.757 kb on - strand, within Shew_0253 at 272.801 kb on + strand, within Shew_0253 at 272.801 kb on + strand, within Shew_0253 at 272.809 kb on - strand, within Shew_0253 at 272.809 kb on - strand, within Shew_0253 at 272.886 kb on - strand at 272.952 kb on + strand at 272.957 kb on + strand at 272.962 kb on + strand at 272.962 kb on + strand at 272.962 kb on + strand at 272.965 kb on - strand at 272.967 kb on + strand at 272.967 kb on + strand at 272.970 kb on - strand at 272.972 kb on + strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 273.133 kb on + strand, within Shew_0254 at 273.153 kb on + strand, within Shew_0254 at 273.163 kb on + strand, within Shew_0254 at 273.163 kb on + strand, within Shew_0254 at 273.166 kb on - strand, within Shew_0254 at 273.166 kb on - strand, within Shew_0254 at 273.171 kb on - strand, within Shew_0254 at 273.171 kb on - strand, within Shew_0254 at 273.190 kb on + strand, within Shew_0254 at 273.227 kb on + strand, within Shew_0254 at 273.249 kb on + strand, within Shew_0254 at 273.313 kb on - strand, within Shew_0254 at 273.372 kb on + strand, within Shew_0254 at 273.389 kb on + strand, within Shew_0254 at 273.398 kb on - strand, within Shew_0254 at 273.407 kb on - strand, within Shew_0254 at 273.412 kb on + strand, within Shew_0254 at 273.445 kb on + strand, within Shew_0254 at 273.446 kb on - strand, within Shew_0254 at 273.514 kb on + strand at 273.514 kb on + strand at 273.514 kb on - strand at 273.519 kb on + strand at 273.521 kb on - strand at 273.527 kb on + strand at 273.527 kb on - strand at 273.585 kb on - strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.606 kb on - strand at 273.606 kb on - strand at 273.606 kb on - strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.618 kb on - strand at 273.618 kb on - strand at 273.623 kb on - strand at 273.624 kb on + strand at 273.632 kb on + strand at 273.634 kb on + strand at 273.634 kb on + strand at 273.634 kb on + strand at 273.642 kb on - strand at 273.642 kb on - strand at 273.649 kb on - strand at 273.667 kb on - strand at 273.689 kb on + strand at 273.697 kb on - strand at 273.697 kb on - strand at 273.697 kb on - strand at 273.722 kb on - strand, within Shew_0255 at 273.722 kb on - strand, within Shew_0255 at 273.722 kb on - strand, within Shew_0255 at 273.746 kb on + strand, within Shew_0255 at 273.749 kb on - strand, within Shew_0255 at 273.756 kb on + strand, within Shew_0255 at 273.769 kb on - strand, within Shew_0255 at 273.801 kb on - strand, within Shew_0255 at 273.825 kb on - strand, within Shew_0255 at 273.872 kb on - strand, within Shew_0255 at 273.873 kb on - strand, within Shew_0255 at 273.873 kb on - strand, within Shew_0255 at 273.875 kb on + strand, within Shew_0255 at 273.921 kb on + strand, within Shew_0255 at 273.931 kb on + strand, within Shew_0255 at 273.940 kb on - strand, within Shew_0255 at 273.970 kb on - strand, within Shew_0255 at 274.036 kb on + strand, within Shew_0255 at 274.041 kb on + strand, within Shew_0255 at 274.049 kb on - strand, within Shew_0255 at 274.059 kb on + strand, within Shew_0255 at 274.059 kb on + strand, within Shew_0255 at 274.059 kb on + strand, within Shew_0255 at 274.063 kb on - strand, within Shew_0255 at 274.076 kb on + strand, within Shew_0255 at 274.076 kb on + strand, within Shew_0255 at 274.084 kb on - strand, within Shew_0255 at 274.084 kb on - strand, within Shew_0255 at 274.084 kb on - strand, within Shew_0255 at 274.095 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.113 kb on + strand, within Shew_0255 at 274.120 kb on + strand, within Shew_0255 at 274.179 kb on + strand, within Shew_0255 at 274.179 kb on + strand, within Shew_0255 at 274.179 kb on + strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.188 kb on + strand, within Shew_0255 at 274.194 kb on + strand, within Shew_0255 at 274.195 kb on + strand, within Shew_0255 at 274.195 kb on + strand, within Shew_0255 at 274.195 kb on + strand, within Shew_0255 at 274.195 kb on + strand, within Shew_0255 at 274.201 kb on - strand, within Shew_0255 at 274.203 kb on - strand, within Shew_0255 at 274.203 kb on - strand, within Shew_0255 at 274.203 kb on - strand, within Shew_0255 at 274.205 kb on + strand, within Shew_0255 at 274.205 kb on + strand, within Shew_0255 at 274.213 kb on - strand, within Shew_0255 at 274.216 kb on - strand, within Shew_0255 at 274.219 kb on + strand, within Shew_0255 at 274.243 kb on + strand, within Shew_0255 at 274.246 kb on - strand, within Shew_0255 at 274.251 kb on - strand, within Shew_0255 at 274.284 kb on - strand at 274.284 kb on - strand at 274.298 kb on - strand at 274.300 kb on + strand at 274.397 kb on + strand at 274.400 kb on + strand at 274.418 kb on - strand at 274.418 kb on - strand at 274.434 kb on + strand at 274.434 kb on + strand at 274.434 kb on + strand at 274.442 kb on - strand at 274.442 kb on - strand at 274.593 kb on + strand at 274.608 kb on - strand at 274.629 kb on - strand at 274.650 kb on - strand at 274.650 kb on - strand at 274.655 kb on + strand at 274.745 kb on - strand at 274.746 kb on + strand at 275.142 kb on - strand, within Shew_0256 at 275.142 kb on - strand, within Shew_0256
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 272,669 - Shew_0253 0.71 +0.2 272,757 - Shew_0253 0.79 +0.0 272,801 + Shew_0253 0.83 +0.2 272,801 + Shew_0253 0.83 -0.2 272,809 - Shew_0253 0.84 -0.6 272,809 - Shew_0253 0.84 +0.6 272,886 - -0.1 272,952 + +0.2 272,957 + +0.9 272,962 + -0.2 272,962 + +0.6 272,962 + +0.4 272,965 - +0.2 272,967 + -0.2 272,967 + +0.7 272,970 - -0.3 272,972 + +1.2 272,975 - -0.9 272,975 - +0.1 272,975 - -0.2 272,975 - +0.4 272,975 - -0.4 272,975 - +0.2 272,975 - -0.1 273,133 + Shew_0254 0.24 -0.1 273,153 + Shew_0254 0.28 -0.9 273,163 + Shew_0254 0.30 -0.4 273,163 + Shew_0254 0.30 +0.2 273,166 - Shew_0254 0.31 +0.3 273,166 - Shew_0254 0.31 -0.1 273,171 - Shew_0254 0.32 +0.5 273,171 - Shew_0254 0.32 +0.2 273,190 + Shew_0254 0.35 +0.3 273,227 + Shew_0254 0.43 +0.5 273,249 + Shew_0254 0.47 -0.2 273,313 - Shew_0254 0.59 -0.3 273,372 + Shew_0254 0.71 +0.7 273,389 + Shew_0254 0.74 +1.0 273,398 - Shew_0254 0.76 -0.1 273,407 - Shew_0254 0.78 +0.4 273,412 + Shew_0254 0.79 -0.3 273,445 + Shew_0254 0.85 -0.3 273,446 - Shew_0254 0.85 +2.9 273,514 + +0.6 273,514 + +1.8 273,514 - +0.3 273,519 + +0.4 273,521 - +0.1 273,527 + -0.5 273,527 - +0.7 273,585 - +0.1 273,598 + -1.5 273,598 + -0.4 273,598 + +0.1 273,598 + -0.0 273,598 + +0.6 273,606 - -0.0 273,606 - +0.1 273,606 - +0.4 273,608 + +0.6 273,608 + -0.5 273,608 + +0.1 273,608 + +0.4 273,608 + +0.1 273,608 + -0.1 273,608 + -0.3 273,608 + +0.6 273,608 + -0.4 273,608 + +0.7 273,608 + +0.1 273,608 + +0.3 273,608 + +0.7 273,608 + -1.0 273,608 + +0.2 273,608 + +0.3 273,608 + -0.1 273,608 + -0.3 273,608 + +0.4 273,616 - +0.0 273,616 - +0.0 273,616 - -0.1 273,616 - +0.0 273,616 - +0.1 273,616 - -0.8 273,616 - -0.9 273,616 - -0.7 273,616 - +0.7 273,616 - -0.3 273,616 - +0.2 273,616 - -0.2 273,616 - +0.2 273,616 - -0.1 273,616 - -0.3 273,616 - -1.2 273,616 - -0.4 273,616 - -0.5 273,616 - +0.2 273,616 - +0.8 273,616 - -0.2 273,616 - -0.3 273,616 - +0.3 273,618 - -0.2 273,618 - -0.3 273,623 - +0.1 273,624 + +0.2 273,632 + -0.6 273,634 + -0.2 273,634 + -0.5 273,634 + +0.4 273,642 - +0.1 273,642 - +0.0 273,649 - +0.2 273,667 - +0.1 273,689 + +0.9 273,697 - +1.1 273,697 - -0.0 273,697 - +0.5 273,722 - Shew_0255 0.10 +0.0 273,722 - Shew_0255 0.10 -0.3 273,722 - Shew_0255 0.10 +1.5 273,746 + Shew_0255 0.14 +0.3 273,749 - Shew_0255 0.14 -1.5 273,756 + Shew_0255 0.15 +0.1 273,769 - Shew_0255 0.17 +0.4 273,801 - Shew_0255 0.22 -0.2 273,825 - Shew_0255 0.26 +1.0 273,872 - Shew_0255 0.32 -0.0 273,873 - Shew_0255 0.33 +1.1 273,873 - Shew_0255 0.33 +0.0 273,875 + Shew_0255 0.33 +1.2 273,921 + Shew_0255 0.40 +0.3 273,931 + Shew_0255 0.41 +0.4 273,940 - Shew_0255 0.42 +0.5 273,970 - Shew_0255 0.47 +0.2 274,036 + Shew_0255 0.57 -0.0 274,041 + Shew_0255 0.57 -0.2 274,049 - Shew_0255 0.58 +2.8 274,059 + Shew_0255 0.60 +0.1 274,059 + Shew_0255 0.60 -0.2 274,059 + Shew_0255 0.60 -0.4 274,063 - Shew_0255 0.60 +0.5 274,076 + Shew_0255 0.62 -0.0 274,076 + Shew_0255 0.62 +0.5 274,084 - Shew_0255 0.64 +0.1 274,084 - Shew_0255 0.64 +0.0 274,084 - Shew_0255 0.64 -1.3 274,095 + Shew_0255 0.65 +0.1 274,096 + Shew_0255 0.65 +0.2 274,096 + Shew_0255 0.65 -0.3 274,096 + Shew_0255 0.65 +0.2 274,096 + Shew_0255 0.65 -0.2 274,096 + Shew_0255 0.65 +0.2 274,096 + Shew_0255 0.65 +0.5 274,104 - Shew_0255 0.67 +0.0 274,104 - Shew_0255 0.67 -0.3 274,104 - Shew_0255 0.67 -0.5 274,104 - Shew_0255 0.67 -0.1 274,104 - Shew_0255 0.67 -1.8 274,104 - Shew_0255 0.67 +0.5 274,113 + Shew_0255 0.68 -0.4 274,120 + Shew_0255 0.69 -1.2 274,179 + Shew_0255 0.78 +0.4 274,179 + Shew_0255 0.78 -0.3 274,179 + Shew_0255 0.78 -0.2 274,187 - Shew_0255 0.79 +0.7 274,187 - Shew_0255 0.79 +0.9 274,187 - Shew_0255 0.79 +0.1 274,187 - Shew_0255 0.79 +0.6 274,187 - Shew_0255 0.79 -0.1 274,187 - Shew_0255 0.79 +5.2 274,188 + Shew_0255 0.79 -0.1 274,194 + Shew_0255 0.80 -0.4 274,195 + Shew_0255 0.80 -1.2 274,195 + Shew_0255 0.80 +0.3 274,195 + Shew_0255 0.80 -0.5 274,195 + Shew_0255 0.80 +0.4 274,201 - Shew_0255 0.81 +0.0 274,203 - Shew_0255 0.81 +0.5 274,203 - Shew_0255 0.81 +1.0 274,203 - Shew_0255 0.81 -0.0 274,205 + Shew_0255 0.81 +0.0 274,205 + Shew_0255 0.81 -0.5 274,213 - Shew_0255 0.83 +0.1 274,216 - Shew_0255 0.83 -0.1 274,219 + Shew_0255 0.83 +0.0 274,243 + Shew_0255 0.87 +0.1 274,246 - Shew_0255 0.87 +0.2 274,251 - Shew_0255 0.88 -0.0 274,284 - +0.5 274,284 - -0.0 274,298 - -0.8 274,300 + -0.2 274,397 + +0.3 274,400 + -0.9 274,418 - -1.7 274,418 - +0.8 274,434 + +0.1 274,434 + -0.0 274,434 + +0.2 274,442 - +0.1 274,442 - -0.5 274,593 + -1.5 274,608 - +0.2 274,629 - -0.7 274,650 - +0.2 274,650 - -1.5 274,655 + -1.3 274,745 - +0.2 274,746 + +0.1 275,142 - Shew_0256 0.49 +0.8 275,142 - Shew_0256 0.49 +0.1
Or see this region's nucleotide sequence