Experiment: m.b. nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4142 and Dshi_4143 are separated by 9 nucleotides Dshi_4143 and Dshi_4144 are separated by 117 nucleotides Dshi_4144 and Dshi_4145 are separated by 6 nucleotides
Dshi_4142: Dshi_4142 - NAD-dependent epimerase/dehydratase (RefSeq), at 74,668 to 75,609
_4142
Dshi_4143: Dshi_4143 - glycosyl transferase family 2 (RefSeq), at 75,619 to 76,494
_4143
Dshi_4144: Dshi_4144 - transferase hexapeptide repeat containing protein (RefSeq), at 76,612 to 77,184
_4144
Dshi_4145: Dshi_4145 - glycosyl transferase family 2 (RefSeq), at 77,191 to 78,195
_4145
Position (kb) 75
76
77 Strain fitness (log2 ratio) -1
0
1
2 at 74.646 kb on + strand at 74.654 kb on - strand at 74.693 kb on - strand at 74.710 kb on + strand at 74.715 kb on + strand at 74.748 kb on + strand at 74.753 kb on + strand at 74.756 kb on - strand at 74.756 kb on - strand at 74.768 kb on + strand, within Dshi_4142 at 74.791 kb on - strand, within Dshi_4142 at 74.795 kb on - strand, within Dshi_4142 at 74.809 kb on + strand, within Dshi_4142 at 74.943 kb on - strand, within Dshi_4142 at 74.957 kb on + strand, within Dshi_4142 at 74.999 kb on - strand, within Dshi_4142 at 75.193 kb on - strand, within Dshi_4142 at 75.270 kb on - strand, within Dshi_4142 at 75.294 kb on + strand, within Dshi_4142 at 75.358 kb on + strand, within Dshi_4142 at 75.358 kb on - strand, within Dshi_4142 at 75.358 kb on - strand, within Dshi_4142 at 75.677 kb on + strand at 75.697 kb on + strand at 75.716 kb on + strand, within Dshi_4143 at 75.764 kb on + strand, within Dshi_4143 at 75.837 kb on + strand, within Dshi_4143 at 75.862 kb on + strand, within Dshi_4143 at 75.910 kb on - strand, within Dshi_4143 at 76.002 kb on + strand, within Dshi_4143 at 76.021 kb on + strand, within Dshi_4143 at 76.099 kb on + strand, within Dshi_4143 at 76.110 kb on + strand, within Dshi_4143 at 76.203 kb on + strand, within Dshi_4143 at 76.235 kb on - strand, within Dshi_4143 at 76.306 kb on + strand, within Dshi_4143 at 76.318 kb on - strand, within Dshi_4143 at 76.362 kb on + strand, within Dshi_4143 at 76.648 kb on - strand at 76.648 kb on - strand at 76.661 kb on - strand at 76.751 kb on - strand, within Dshi_4144 at 76.825 kb on + strand, within Dshi_4144 at 76.951 kb on - strand, within Dshi_4144 at 76.979 kb on - strand, within Dshi_4144 at 76.981 kb on + strand, within Dshi_4144 at 77.045 kb on + strand, within Dshi_4144 at 77.120 kb on - strand, within Dshi_4144 at 77.138 kb on + strand at 77.309 kb on - strand, within Dshi_4145 at 77.314 kb on - strand, within Dshi_4145 at 77.359 kb on - strand, within Dshi_4145 at 77.373 kb on - strand, within Dshi_4145 at 77.476 kb on + strand, within Dshi_4145 at 77.486 kb on + strand, within Dshi_4145
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM remove 74,646 + -0.7 74,654 - +0.2 74,693 - +0.7 74,710 + +1.3 74,715 + -1.0 74,748 + +1.3 74,753 + -1.7 74,756 - -0.7 74,756 - +0.9 74,768 + Dshi_4142 0.11 -0.7 74,791 - Dshi_4142 0.13 -0.9 74,795 - Dshi_4142 0.13 +0.2 74,809 + Dshi_4142 0.15 -0.4 74,943 - Dshi_4142 0.29 -0.3 74,957 + Dshi_4142 0.31 -1.0 74,999 - Dshi_4142 0.35 +0.6 75,193 - Dshi_4142 0.56 +0.3 75,270 - Dshi_4142 0.64 -0.4 75,294 + Dshi_4142 0.66 -1.0 75,358 + Dshi_4142 0.73 +0.5 75,358 - Dshi_4142 0.73 +0.6 75,358 - Dshi_4142 0.73 -1.0 75,677 + -0.7 75,697 + -0.5 75,716 + Dshi_4143 0.11 -0.9 75,764 + Dshi_4143 0.17 +0.4 75,837 + Dshi_4143 0.25 +1.1 75,862 + Dshi_4143 0.28 -0.6 75,910 - Dshi_4143 0.33 -0.7 76,002 + Dshi_4143 0.44 -0.7 76,021 + Dshi_4143 0.46 +1.0 76,099 + Dshi_4143 0.55 +0.3 76,110 + Dshi_4143 0.56 +0.4 76,203 + Dshi_4143 0.67 +0.3 76,235 - Dshi_4143 0.70 +0.6 76,306 + Dshi_4143 0.78 -0.7 76,318 - Dshi_4143 0.80 +0.3 76,362 + Dshi_4143 0.85 -0.4 76,648 - +0.4 76,648 - -0.7 76,661 - +1.1 76,751 - Dshi_4144 0.24 +1.6 76,825 + Dshi_4144 0.37 +0.7 76,951 - Dshi_4144 0.59 -0.1 76,979 - Dshi_4144 0.64 +1.3 76,981 + Dshi_4144 0.64 +0.5 77,045 + Dshi_4144 0.76 -0.4 77,120 - Dshi_4144 0.89 -0.5 77,138 + -0.4 77,309 - Dshi_4145 0.12 +0.6 77,314 - Dshi_4145 0.12 -0.1 77,359 - Dshi_4145 0.17 +0.6 77,373 - Dshi_4145 0.18 +2.3 77,476 + Dshi_4145 0.28 -0.7 77,486 + Dshi_4145 0.29 -0.1
Or see this region's nucleotide sequence