Experiment: m.b. nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3024 and Dshi_3025 are separated by 106 nucleotides Dshi_3025 and Dshi_3026 are separated by 55 nucleotides Dshi_3026 and Dshi_3027 are separated by 62 nucleotides Dshi_3027 and Dshi_3028 are separated by 4 nucleotides
Dshi_3024: Dshi_3024 - transcriptional regulator, AraC family (RefSeq), at 3,194,067 to 3,194,930
_3024
Dshi_3025: Dshi_3025 - OmpA/MotB domain protein (RefSeq), at 3,195,037 to 3,195,663
_3025
Dshi_3026: Dshi_3026 - GntR domain protein (RefSeq), at 3,195,719 to 3,196,486
_3026
Dshi_3027: Dshi_3027 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,196,549 to 3,197,109
_3027
Dshi_3028: Dshi_3028 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,197,114 to 3,197,638
_3028
Position (kb)
3195
3196
3197 Strain fitness (log2 ratio)
-1
0
1 at 3194.756 kb on + strand, within Dshi_3024 at 3194.756 kb on + strand, within Dshi_3024 at 3194.764 kb on - strand, within Dshi_3024 at 3194.897 kb on - strand at 3194.921 kb on + strand at 3195.035 kb on - strand at 3195.054 kb on - strand at 3195.321 kb on + strand, within Dshi_3025 at 3195.352 kb on + strand, within Dshi_3025 at 3195.357 kb on + strand, within Dshi_3025 at 3195.444 kb on - strand, within Dshi_3025 at 3195.478 kb on - strand, within Dshi_3025 at 3195.803 kb on - strand, within Dshi_3026 at 3195.903 kb on - strand, within Dshi_3026 at 3196.064 kb on + strand, within Dshi_3026 at 3196.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM remove 3,194,756 + Dshi_3024 0.80 +0.2 3,194,756 + Dshi_3024 0.80 -0.2 3,194,764 - Dshi_3024 0.81 +1.3 3,194,897 - -0.3 3,194,921 + +0.5 3,195,035 - -0.5 3,195,054 - +0.4 3,195,321 + Dshi_3025 0.45 -0.1 3,195,352 + Dshi_3025 0.50 +0.4 3,195,357 + Dshi_3025 0.51 +0.1 3,195,444 - Dshi_3025 0.65 +0.0 3,195,478 - Dshi_3025 0.70 +0.9 3,195,803 - Dshi_3026 0.11 -0.8 3,195,903 - Dshi_3026 0.24 -1.6 3,196,064 + Dshi_3026 0.45 -0.8 3,196,495 - +0.5
Or see this region's nucleotide sequence