Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0549

Experiment: MoLS4 with L-Glutamate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlivH and DVU0549 are separated by 27 nucleotidesDVU0549 and livG overlap by 1 nucleotideslivG and livF overlap by 8 nucleotides DVU0548: livH - high-affinity branched-chain amino acid ABC transporter, permease protein (TIGR), at 618,218 to 619,126 livH DVU0549: DVU0549 - proline/arginine ABC transporter, permease component (from data), at 619,154 to 620,377 DVU0549 DVU0550: livG - high-affinity branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 620,377 to 621,165 livG DVU0551: livF - high-affinity branched-chain amino acid ABC transporter ATP-binding protein (TIGR), at 621,158 to 621,862 livF Position (kb) 619 620 621Strain fitness (log2 ratio) -2 -1 0 1at 618.292 kb on + strandat 618.292 kb on + strandat 618.297 kb on + strandat 618.333 kb on - strand, within livHat 618.449 kb on + strand, within livHat 618.464 kb on + strand, within livHat 618.464 kb on + strand, within livHat 618.501 kb on - strand, within livHat 618.521 kb on - strand, within livHat 618.588 kb on - strand, within livHat 618.699 kb on + strand, within livHat 618.706 kb on + strand, within livHat 618.716 kb on - strand, within livHat 618.722 kb on + strand, within livHat 618.739 kb on + strand, within livHat 618.744 kb on + strand, within livHat 618.747 kb on - strand, within livHat 618.747 kb on - strand, within livHat 618.747 kb on - strand, within livHat 618.777 kb on + strand, within livHat 618.801 kb on + strand, within livHat 618.815 kb on - strand, within livHat 618.924 kb on - strand, within livHat 619.060 kb on + strandat 619.113 kb on - strandat 619.245 kb on + strandat 619.361 kb on - strand, within DVU0549at 619.457 kb on + strand, within DVU0549at 619.471 kb on + strand, within DVU0549at 619.518 kb on - strand, within DVU0549at 619.518 kb on - strand, within DVU0549at 619.615 kb on - strand, within DVU0549at 619.616 kb on - strand, within DVU0549at 619.660 kb on - strand, within DVU0549at 619.660 kb on - strand, within DVU0549at 619.678 kb on - strand, within DVU0549at 619.717 kb on + strand, within DVU0549at 619.794 kb on + strand, within DVU0549at 619.877 kb on + strand, within DVU0549at 619.965 kb on + strand, within DVU0549at 620.000 kb on + strand, within DVU0549at 620.007 kb on + strand, within DVU0549at 620.091 kb on + strand, within DVU0549at 620.095 kb on - strand, within DVU0549at 620.100 kb on - strand, within DVU0549at 620.184 kb on + strand, within DVU0549at 620.192 kb on - strand, within DVU0549at 620.322 kb on + strandat 620.455 kb on - strandat 620.459 kb on + strand, within livGat 620.481 kb on + strand, within livGat 620.667 kb on + strand, within livGat 620.797 kb on + strand, within livGat 620.826 kb on + strand, within livGat 620.850 kb on + strand, within livGat 620.850 kb on + strand, within livGat 620.850 kb on + strand, within livGat 620.858 kb on - strand, within livGat 620.858 kb on - strand, within livGat 620.858 kb on - strand, within livGat 620.916 kb on - strand, within livGat 621.000 kb on + strand, within livGat 621.044 kb on - strand, within livGat 621.098 kb on + strandat 621.101 kb on - strandat 621.130 kb on + strandat 621.167 kb on - strandat 621.167 kb on - strandat 621.177 kb on - strandat 621.177 kb on - strandat 621.221 kb on - strandat 621.280 kb on - strand, within livFat 621.280 kb on - strand, within livFat 621.287 kb on - strand, within livFat 621.311 kb on + strand, within livFat 621.321 kb on + strand, within livF

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamate (N)
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618,292 + -0.8
618,292 + -1.6
618,297 + -1.2
618,333 - livH DVU0548 0.13 -1.5
618,449 + livH DVU0548 0.25 -1.5
618,464 + livH DVU0548 0.27 -0.7
618,464 + livH DVU0548 0.27 -1.1
618,501 - livH DVU0548 0.31 -0.7
618,521 - livH DVU0548 0.33 -2.0
618,588 - livH DVU0548 0.41 +0.6
618,699 + livH DVU0548 0.53 -0.6
618,706 + livH DVU0548 0.54 -0.9
618,716 - livH DVU0548 0.55 -0.3
618,722 + livH DVU0548 0.55 -0.8
618,739 + livH DVU0548 0.57 -1.1
618,744 + livH DVU0548 0.58 -1.4
618,747 - livH DVU0548 0.58 -1.4
618,747 - livH DVU0548 0.58 -1.1
618,747 - livH DVU0548 0.58 -0.8
618,777 + livH DVU0548 0.61 -1.0
618,801 + livH DVU0548 0.64 -1.1
618,815 - livH DVU0548 0.66 -1.0
618,924 - livH DVU0548 0.78 -0.9
619,060 + -1.0
619,113 - -0.8
619,245 + -0.4
619,361 - DVU0549 0.17 -0.8
619,457 + DVU0549 0.25 -0.8
619,471 + DVU0549 0.26 -0.9
619,518 - DVU0549 0.30 -0.6
619,518 - DVU0549 0.30 -1.8
619,615 - DVU0549 0.38 -1.5
619,616 - DVU0549 0.38 -1.1
619,660 - DVU0549 0.41 -1.8
619,660 - DVU0549 0.41 +0.3
619,678 - DVU0549 0.43 -1.2
619,717 + DVU0549 0.46 -0.5
619,794 + DVU0549 0.52 -0.8
619,877 + DVU0549 0.59 -0.3
619,965 + DVU0549 0.66 -0.7
620,000 + DVU0549 0.69 -0.4
620,007 + DVU0549 0.70 -0.9
620,091 + DVU0549 0.77 -1.3
620,095 - DVU0549 0.77 -1.1
620,100 - DVU0549 0.77 -0.7
620,184 + DVU0549 0.84 -0.6
620,192 - DVU0549 0.85 -0.7
620,322 + -0.5
620,455 - -0.6
620,459 + livG DVU0550 0.10 -0.8
620,481 + livG DVU0550 0.13 +0.1
620,667 + livG DVU0550 0.37 -0.6
620,797 + livG DVU0550 0.53 -0.9
620,826 + livG DVU0550 0.57 -1.2
620,850 + livG DVU0550 0.60 -0.5
620,850 + livG DVU0550 0.60 -0.9
620,850 + livG DVU0550 0.60 -1.2
620,858 - livG DVU0550 0.61 -0.6
620,858 - livG DVU0550 0.61 -1.1
620,858 - livG DVU0550 0.61 -0.5
620,916 - livG DVU0550 0.68 -1.4
621,000 + livG DVU0550 0.79 -0.5
621,044 - livG DVU0550 0.85 -0.5
621,098 + -0.2
621,101 - -1.0
621,130 + -1.0
621,167 - -0.7
621,167 - -0.2
621,177 - -1.1
621,177 - -0.5
621,221 - -0.3
621,280 - livF DVU0551 0.17 -0.2
621,280 - livF DVU0551 0.17 -1.0
621,287 - livF DVU0551 0.18 -2.6
621,311 + livF DVU0551 0.22 -0.8
621,321 + livF DVU0551 0.23 -1.5

Or see this region's nucleotide sequence