Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2861

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2859 and Rru_A2860 are separated by 35 nucleotidesRru_A2860 and Rru_A2861 overlap by 4 nucleotidesRru_A2861 and Rru_A2862 overlap by 4 nucleotidesRru_A2862 and Rru_A2863 are separated by 102 nucleotides Rru_A2859: Rru_A2859 - hypothetical protein (NCBI), at 3,292,091 to 3,294,445 _A2859 Rru_A2860: Rru_A2860 - hypothetical protein (NCBI), at 3,294,481 to 3,295,125 _A2860 Rru_A2861: Rru_A2861 - hypothetical protein (NCBI), at 3,295,122 to 3,295,700 _A2861 Rru_A2862: Rru_A2862 - Alpha/beta hydrolase fold (NCBI), at 3,295,697 to 3,296,512 _A2862 Rru_A2863: Rru_A2863 - Transcriptional Regulator, TetR family (NCBI), at 3,296,615 to 3,297,265 _A2863 Position (kb) 3295 3296Strain fitness (log2 ratio) -2 -1 0 1at 3294.245 kb on + strandat 3294.245 kb on + strandat 3294.245 kb on + strandat 3294.245 kb on + strandat 3294.245 kb on + strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.460 kb on + strandat 3294.460 kb on + strandat 3294.460 kb on + strandat 3294.557 kb on + strand, within Rru_A2860at 3294.557 kb on + strand, within Rru_A2860at 3294.557 kb on + strand, within Rru_A2860at 3294.557 kb on + strand, within Rru_A2860at 3294.558 kb on - strand, within Rru_A2860at 3294.623 kb on - strand, within Rru_A2860at 3294.679 kb on - strand, within Rru_A2860at 3295.039 kb on + strand, within Rru_A2860at 3295.039 kb on + strand, within Rru_A2860at 3295.040 kb on - strand, within Rru_A2860at 3295.631 kb on + strand, within Rru_A2861at 3295.631 kb on + strand, within Rru_A2861at 3295.632 kb on - strand, within Rru_A2861at 3295.729 kb on + strandat 3295.730 kb on - strandat 3295.816 kb on - strand, within Rru_A2862at 3295.886 kb on + strand, within Rru_A2862at 3295.887 kb on - strand, within Rru_A2862at 3295.946 kb on + strand, within Rru_A2862at 3295.946 kb on + strand, within Rru_A2862at 3295.946 kb on + strand, within Rru_A2862at 3295.947 kb on - strand, within Rru_A2862at 3295.947 kb on - strand, within Rru_A2862at 3296.026 kb on + strand, within Rru_A2862at 3296.027 kb on - strand, within Rru_A2862at 3296.336 kb on + strand, within Rru_A2862at 3296.336 kb on + strand, within Rru_A2862at 3296.336 kb on + strand, within Rru_A2862at 3296.336 kb on + strand, within Rru_A2862at 3296.337 kb on - strand, within Rru_A2862at 3296.337 kb on - strand, within Rru_A2862at 3296.337 kb on - strand, within Rru_A2862at 3296.337 kb on - strand, within Rru_A2862at 3296.419 kb on + strand, within Rru_A2862at 3296.419 kb on + strand, within Rru_A2862at 3296.419 kb on + strand, within Rru_A2862at 3296.419 kb on + strand, within Rru_A2862at 3296.420 kb on - strand, within Rru_A2862at 3296.420 kb on - strand, within Rru_A2862at 3296.420 kb on - strand, within Rru_A2862at 3296.420 kb on - strand, within Rru_A2862at 3296.510 kb on + strandat 3296.511 kb on - strandat 3296.511 kb on - strandat 3296.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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3,294,245 + -0.1
3,294,245 + -1.1
3,294,245 + -0.1
3,294,245 + -0.1
3,294,245 + -0.1
3,294,246 - -0.1
3,294,246 - -0.1
3,294,246 - -0.1
3,294,246 - -0.1
3,294,246 - -0.1
3,294,246 - -0.7
3,294,460 + -0.1
3,294,460 + -0.1
3,294,460 + -0.1
3,294,557 + Rru_A2860 0.12 -0.1
3,294,557 + Rru_A2860 0.12 -0.1
3,294,557 + Rru_A2860 0.12 -0.1
3,294,557 + Rru_A2860 0.12 -1.7
3,294,558 - Rru_A2860 0.12 -0.1
3,294,623 - Rru_A2860 0.22 -1.9
3,294,679 - Rru_A2860 0.31 -0.1
3,295,039 + Rru_A2860 0.87 -0.9
3,295,039 + Rru_A2860 0.87 -0.1
3,295,040 - Rru_A2860 0.87 -0.1
3,295,631 + Rru_A2861 0.88 -0.1
3,295,631 + Rru_A2861 0.88 -1.7
3,295,632 - Rru_A2861 0.88 -0.1
3,295,729 + -0.1
3,295,730 - -0.1
3,295,816 - Rru_A2862 0.15 -0.1
3,295,886 + Rru_A2862 0.23 -1.2
3,295,887 - Rru_A2862 0.23 -0.1
3,295,946 + Rru_A2862 0.31 -1.0
3,295,946 + Rru_A2862 0.31 -0.1
3,295,946 + Rru_A2862 0.31 -1.1
3,295,947 - Rru_A2862 0.31 -0.1
3,295,947 - Rru_A2862 0.31 -0.1
3,296,026 + Rru_A2862 0.40 -0.1
3,296,027 - Rru_A2862 0.40 -0.1
3,296,336 + Rru_A2862 0.78 -0.1
3,296,336 + Rru_A2862 0.78 -0.1
3,296,336 + Rru_A2862 0.78 -0.1
3,296,336 + Rru_A2862 0.78 -0.1
3,296,337 - Rru_A2862 0.78 -1.1
3,296,337 - Rru_A2862 0.78 -0.1
3,296,337 - Rru_A2862 0.78 -0.9
3,296,337 - Rru_A2862 0.78 -1.0
3,296,419 + Rru_A2862 0.88 -0.1
3,296,419 + Rru_A2862 0.88 -0.1
3,296,419 + Rru_A2862 0.88 -1.6
3,296,419 + Rru_A2862 0.88 -0.1
3,296,420 - Rru_A2862 0.89 -0.1
3,296,420 - Rru_A2862 0.89 -0.1
3,296,420 - Rru_A2862 0.89 -0.1
3,296,420 - Rru_A2862 0.89 -0.1
3,296,510 + -0.1
3,296,511 - -0.1
3,296,511 - -0.1
3,296,617 - -0.1

Or see this region's nucleotide sequence