Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2616 and Rru_A2617 are separated by 52 nucleotides Rru_A2617 and Rru_A2618 are separated by 32 nucleotides
Rru_A2616: Rru_A2616 - Histone deacetylase superfamily (NCBI), at 3,044,654 to 3,045,583
_A2616
Rru_A2617: Rru_A2617 - Exonuclease VII, small subunit (NCBI), at 3,045,636 to 3,046,004
_A2617
Rru_A2618: Rru_A2618 - Polyprenyl synthetase (NCBI), at 3,046,037 to 3,046,954
_A2618
Position (kb)
3045
3046
3047 Strain fitness (log2 ratio)
-2
-1
0
1 at 3044.882 kb on + strand, within Rru_A2616 at 3044.882 kb on + strand, within Rru_A2616 at 3044.882 kb on + strand, within Rru_A2616 at 3044.882 kb on + strand, within Rru_A2616 at 3044.882 kb on + strand, within Rru_A2616 at 3044.882 kb on + strand, within Rru_A2616 at 3044.882 kb on + strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3044.883 kb on - strand, within Rru_A2616 at 3045.086 kb on + strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.672 kb on + strand at 3045.880 kb on - strand, within Rru_A2617 at 3046.169 kb on + strand, within Rru_A2618
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 3,044,882 + Rru_A2616 0.25 -0.9 3,044,882 + Rru_A2616 0.25 -0.6 3,044,882 + Rru_A2616 0.25 -1.0 3,044,882 + Rru_A2616 0.25 -1.6 3,044,882 + Rru_A2616 0.25 -0.1 3,044,882 + Rru_A2616 0.25 -1.3 3,044,882 + Rru_A2616 0.25 -0.1 3,044,883 - Rru_A2616 0.25 -0.1 3,044,883 - Rru_A2616 0.25 -1.4 3,044,883 - Rru_A2616 0.25 -1.4 3,044,883 - Rru_A2616 0.25 -0.1 3,044,883 - Rru_A2616 0.25 -0.1 3,044,883 - Rru_A2616 0.25 -0.1 3,044,883 - Rru_A2616 0.25 -1.1 3,044,883 - Rru_A2616 0.25 -0.1 3,044,883 - Rru_A2616 0.25 -1.1 3,044,883 - Rru_A2616 0.25 -0.1 3,044,883 - Rru_A2616 0.25 -0.1 3,044,883 - Rru_A2616 0.25 -1.0 3,044,883 - Rru_A2616 0.25 -1.5 3,045,086 + Rru_A2616 0.46 -1.1 3,045,087 - Rru_A2616 0.47 -1.3 3,045,087 - Rru_A2616 0.47 -0.1 3,045,087 - Rru_A2616 0.47 -1.1 3,045,087 - Rru_A2616 0.47 -0.1 3,045,087 - Rru_A2616 0.47 -0.1 3,045,087 - Rru_A2616 0.47 -0.1 3,045,166 + Rru_A2616 0.55 -0.1 3,045,166 + Rru_A2616 0.55 -0.1 3,045,166 + Rru_A2616 0.55 -0.1 3,045,166 + Rru_A2616 0.55 -1.5 3,045,166 + Rru_A2616 0.55 -0.1 3,045,166 + Rru_A2616 0.55 -0.1 3,045,167 - Rru_A2616 0.55 -0.1 3,045,167 - Rru_A2616 0.55 -0.1 3,045,167 - Rru_A2616 0.55 -0.1 3,045,167 - Rru_A2616 0.55 -1.0 3,045,167 - Rru_A2616 0.55 -0.1 3,045,167 - Rru_A2616 0.55 -0.9 3,045,167 - Rru_A2616 0.55 -0.1 3,045,194 + Rru_A2616 0.58 -1.3 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 -0.9 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 -0.7 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 -1.6 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 -1.4 3,045,195 - Rru_A2616 0.58 -0.1 3,045,195 - Rru_A2616 0.58 -1.4 3,045,195 - Rru_A2616 0.58 -0.1 3,045,195 - Rru_A2616 0.58 -2.1 3,045,195 - Rru_A2616 0.58 -0.1 3,045,195 - Rru_A2616 0.58 -1.1 3,045,195 - Rru_A2616 0.58 -1.1 3,045,195 - Rru_A2616 0.58 -1.3 3,045,195 - Rru_A2616 0.58 -0.1 3,045,195 - Rru_A2616 0.58 -0.1 3,045,672 + -1.1 3,045,880 - Rru_A2617 0.66 -1.7 3,046,169 + Rru_A2618 0.14 -0.1
Or see this region's nucleotide sequence