Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2617

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2616 and Rru_A2617 are separated by 52 nucleotidesRru_A2617 and Rru_A2618 are separated by 32 nucleotides Rru_A2616: Rru_A2616 - Histone deacetylase superfamily (NCBI), at 3,044,654 to 3,045,583 _A2616 Rru_A2617: Rru_A2617 - Exonuclease VII, small subunit (NCBI), at 3,045,636 to 3,046,004 _A2617 Rru_A2618: Rru_A2618 - Polyprenyl synthetase (NCBI), at 3,046,037 to 3,046,954 _A2618 Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -2 -1 0 1at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3045.086 kb on + strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.672 kb on + strandat 3045.880 kb on - strand, within Rru_A2617at 3046.169 kb on + strand, within Rru_A2618

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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3,044,882 + Rru_A2616 0.25 -0.9
3,044,882 + Rru_A2616 0.25 -0.6
3,044,882 + Rru_A2616 0.25 -1.0
3,044,882 + Rru_A2616 0.25 -1.6
3,044,882 + Rru_A2616 0.25 -0.1
3,044,882 + Rru_A2616 0.25 -1.3
3,044,882 + Rru_A2616 0.25 -0.1
3,044,883 - Rru_A2616 0.25 -0.1
3,044,883 - Rru_A2616 0.25 -1.4
3,044,883 - Rru_A2616 0.25 -1.4
3,044,883 - Rru_A2616 0.25 -0.1
3,044,883 - Rru_A2616 0.25 -0.1
3,044,883 - Rru_A2616 0.25 -0.1
3,044,883 - Rru_A2616 0.25 -1.1
3,044,883 - Rru_A2616 0.25 -0.1
3,044,883 - Rru_A2616 0.25 -1.1
3,044,883 - Rru_A2616 0.25 -0.1
3,044,883 - Rru_A2616 0.25 -0.1
3,044,883 - Rru_A2616 0.25 -1.0
3,044,883 - Rru_A2616 0.25 -1.5
3,045,086 + Rru_A2616 0.46 -1.1
3,045,087 - Rru_A2616 0.47 -1.3
3,045,087 - Rru_A2616 0.47 -0.1
3,045,087 - Rru_A2616 0.47 -1.1
3,045,087 - Rru_A2616 0.47 -0.1
3,045,087 - Rru_A2616 0.47 -0.1
3,045,087 - Rru_A2616 0.47 -0.1
3,045,166 + Rru_A2616 0.55 -0.1
3,045,166 + Rru_A2616 0.55 -0.1
3,045,166 + Rru_A2616 0.55 -0.1
3,045,166 + Rru_A2616 0.55 -1.5
3,045,166 + Rru_A2616 0.55 -0.1
3,045,166 + Rru_A2616 0.55 -0.1
3,045,167 - Rru_A2616 0.55 -0.1
3,045,167 - Rru_A2616 0.55 -0.1
3,045,167 - Rru_A2616 0.55 -0.1
3,045,167 - Rru_A2616 0.55 -1.0
3,045,167 - Rru_A2616 0.55 -0.1
3,045,167 - Rru_A2616 0.55 -0.9
3,045,167 - Rru_A2616 0.55 -0.1
3,045,194 + Rru_A2616 0.58 -1.3
3,045,194 + Rru_A2616 0.58 -0.1
3,045,194 + Rru_A2616 0.58 -0.1
3,045,194 + Rru_A2616 0.58 -0.9
3,045,194 + Rru_A2616 0.58 -0.1
3,045,194 + Rru_A2616 0.58 -0.1
3,045,194 + Rru_A2616 0.58 -0.1
3,045,194 + Rru_A2616 0.58 -0.7
3,045,194 + Rru_A2616 0.58 -0.1
3,045,194 + Rru_A2616 0.58 -1.6
3,045,194 + Rru_A2616 0.58 -0.1
3,045,194 + Rru_A2616 0.58 -0.1
3,045,194 + Rru_A2616 0.58 -1.4
3,045,195 - Rru_A2616 0.58 -0.1
3,045,195 - Rru_A2616 0.58 -1.4
3,045,195 - Rru_A2616 0.58 -0.1
3,045,195 - Rru_A2616 0.58 -2.1
3,045,195 - Rru_A2616 0.58 -0.1
3,045,195 - Rru_A2616 0.58 -1.1
3,045,195 - Rru_A2616 0.58 -1.1
3,045,195 - Rru_A2616 0.58 -1.3
3,045,195 - Rru_A2616 0.58 -0.1
3,045,195 - Rru_A2616 0.58 -0.1
3,045,672 + -1.1
3,045,880 - Rru_A2617 0.66 -1.7
3,046,169 + Rru_A2618 0.14 -0.1

Or see this region's nucleotide sequence