Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2272 and Rru_A2273 are separated by 57 nucleotides Rru_A2273 and Rru_A2274 overlap by 4 nucleotides Rru_A2274 and Rru_A2275 overlap by 4 nucleotides Rru_A2275 and Rru_A2276 overlap by 4 nucleotides
Rru_A2272: Rru_A2272 - TspO and MBR related proteins (NCBI), at 2,631,496 to 2,632,062
_A2272
Rru_A2273: Rru_A2273 - ABC transporter component (NCBI), at 2,632,120 to 2,632,953
_A2273
Rru_A2274: Rru_A2274 - ABC transporter component (NCBI), at 2,632,950 to 2,633,735
_A2274
Rru_A2275: Rru_A2275 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,633,732 to 2,634,631
_A2275
Rru_A2276: Rru_A2276 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,634,628 to 2,635,572
_A2276
Position (kb)
2632
2633
2634 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2631.956 kb on - strand, within Rru_A2272 at 2632.015 kb on + strand at 2632.016 kb on - strand at 2632.074 kb on + strand at 2632.074 kb on + strand at 2632.096 kb on + strand at 2632.097 kb on - strand at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.338 kb on - strand, within Rru_A2273 at 2632.338 kb on - strand, within Rru_A2273 at 2632.549 kb on + strand, within Rru_A2273 at 2632.550 kb on - strand, within Rru_A2273 at 2632.914 kb on - strand at 2632.957 kb on - strand at 2632.972 kb on + strand at 2632.973 kb on - strand at 2634.120 kb on + strand, within Rru_A2275 at 2634.120 kb on + strand, within Rru_A2275 at 2634.121 kb on - strand, within Rru_A2275 at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 2,631,956 - Rru_A2272 0.81 +0.0 2,632,015 + +0.0 2,632,016 - -0.6 2,632,074 + +0.0 2,632,074 + +0.0 2,632,096 + +0.0 2,632,097 - +0.0 2,632,337 + Rru_A2273 0.26 +2.3 2,632,337 + Rru_A2273 0.26 -2.1 2,632,337 + Rru_A2273 0.26 +0.0 2,632,337 + Rru_A2273 0.26 +0.0 2,632,337 + Rru_A2273 0.26 +0.0 2,632,337 + Rru_A2273 0.26 +0.0 2,632,338 - Rru_A2273 0.26 +0.0 2,632,338 - Rru_A2273 0.26 +0.0 2,632,549 + Rru_A2273 0.51 -0.6 2,632,550 - Rru_A2273 0.52 +0.0 2,632,914 - -1.2 2,632,957 - +0.0 2,632,972 + +0.0 2,632,973 - -1.6 2,634,120 + Rru_A2275 0.43 +0.0 2,634,120 + Rru_A2275 0.43 -0.9 2,634,121 - Rru_A2275 0.43 +0.0 2,634,677 + +0.0 2,634,677 + +0.0 2,634,677 + +0.0 2,634,677 + +0.0 2,634,677 + -1.2 2,634,678 - +0.0
Or see this region's nucleotide sequence