Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2274

Experiment: L-Malic Acid (C) and N2; no light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2272 and Rru_A2273 are separated by 57 nucleotidesRru_A2273 and Rru_A2274 overlap by 4 nucleotidesRru_A2274 and Rru_A2275 overlap by 4 nucleotidesRru_A2275 and Rru_A2276 overlap by 4 nucleotides Rru_A2272: Rru_A2272 - TspO and MBR related proteins (NCBI), at 2,631,496 to 2,632,062 _A2272 Rru_A2273: Rru_A2273 - ABC transporter component (NCBI), at 2,632,120 to 2,632,953 _A2273 Rru_A2274: Rru_A2274 - ABC transporter component (NCBI), at 2,632,950 to 2,633,735 _A2274 Rru_A2275: Rru_A2275 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,633,732 to 2,634,631 _A2275 Rru_A2276: Rru_A2276 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,634,628 to 2,635,572 _A2276 Position (kb) 2632 2633 2634Strain fitness (log2 ratio) -2 -1 0 1 2at 2631.956 kb on - strand, within Rru_A2272at 2632.015 kb on + strandat 2632.016 kb on - strandat 2632.074 kb on + strandat 2632.074 kb on + strandat 2632.096 kb on + strandat 2632.097 kb on - strandat 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.338 kb on - strand, within Rru_A2273at 2632.338 kb on - strand, within Rru_A2273at 2632.549 kb on + strand, within Rru_A2273at 2632.550 kb on - strand, within Rru_A2273at 2632.914 kb on - strandat 2632.957 kb on - strandat 2632.972 kb on + strandat 2632.973 kb on - strandat 2634.120 kb on + strand, within Rru_A2275at 2634.120 kb on + strand, within Rru_A2275at 2634.121 kb on - strand, within Rru_A2275at 2634.677 kb on + strandat 2634.677 kb on + strandat 2634.677 kb on + strandat 2634.677 kb on + strandat 2634.677 kb on + strandat 2634.678 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
remove
2,631,956 - Rru_A2272 0.81 +0.0
2,632,015 + +0.0
2,632,016 - -0.6
2,632,074 + +0.0
2,632,074 + +0.0
2,632,096 + +0.0
2,632,097 - +0.0
2,632,337 + Rru_A2273 0.26 +2.3
2,632,337 + Rru_A2273 0.26 -2.1
2,632,337 + Rru_A2273 0.26 +0.0
2,632,337 + Rru_A2273 0.26 +0.0
2,632,337 + Rru_A2273 0.26 +0.0
2,632,337 + Rru_A2273 0.26 +0.0
2,632,338 - Rru_A2273 0.26 +0.0
2,632,338 - Rru_A2273 0.26 +0.0
2,632,549 + Rru_A2273 0.51 -0.6
2,632,550 - Rru_A2273 0.52 +0.0
2,632,914 - -1.2
2,632,957 - +0.0
2,632,972 + +0.0
2,632,973 - -1.6
2,634,120 + Rru_A2275 0.43 +0.0
2,634,120 + Rru_A2275 0.43 -0.9
2,634,121 - Rru_A2275 0.43 +0.0
2,634,677 + +0.0
2,634,677 + +0.0
2,634,677 + +0.0
2,634,677 + +0.0
2,634,677 + -1.2
2,634,678 - +0.0

Or see this region's nucleotide sequence