Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1755 and Rru_A1756 are separated by 17 nucleotides Rru_A1756 and Rru_A1757 are separated by 189 nucleotides Rru_A1757 and Rru_A1758 are separated by 328 nucleotides Rru_A1758 and Rru_A1759 are separated by 210 nucleotides
Rru_A1755: Rru_A1755 - hypothetical protein (NCBI), at 2,049,074 to 2,049,508
_A1755
Rru_A1756: Rru_A1756 - hypothetical protein (NCBI), at 2,049,526 to 2,049,945
_A1756
Rru_A1757: Rru_A1757 - Gid protein (NCBI), at 2,050,135 to 2,051,583
_A1757
Rru_A1758: Rru_A1758 - hypothetical protein (NCBI), at 2,051,912 to 2,052,130
_A1758
Rru_A1759: Rru_A1759 - putative phytoene synthase protein (NCBI), at 2,052,341 to 2,053,189
_A1759
Position (kb)
2050
2051
2052 Strain fitness (log2 ratio)
-2
-1
0
1 at 2050.094 kb on - strand at 2050.099 kb on + strand at 2050.100 kb on - strand at 2050.100 kb on - strand at 2050.255 kb on - strand at 2050.255 kb on - strand at 2050.327 kb on + strand, within Rru_A1757 at 2050.327 kb on + strand, within Rru_A1757 at 2050.327 kb on + strand, within Rru_A1757 at 2050.327 kb on + strand, within Rru_A1757 at 2050.327 kb on + strand, within Rru_A1757 at 2050.327 kb on + strand, within Rru_A1757 at 2050.327 kb on + strand, within Rru_A1757 at 2050.328 kb on - strand, within Rru_A1757 at 2050.328 kb on - strand, within Rru_A1757 at 2050.329 kb on + strand, within Rru_A1757 at 2050.329 kb on + strand, within Rru_A1757 at 2050.330 kb on - strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.717 kb on + strand, within Rru_A1757 at 2050.718 kb on - strand, within Rru_A1757 at 2050.718 kb on - strand, within Rru_A1757 at 2050.718 kb on - strand, within Rru_A1757 at 2050.747 kb on + strand, within Rru_A1757 at 2050.748 kb on - strand, within Rru_A1757 at 2050.748 kb on - strand, within Rru_A1757 at 2050.748 kb on - strand, within Rru_A1757 at 2050.816 kb on + strand, within Rru_A1757 at 2050.978 kb on + strand, within Rru_A1757 at 2050.979 kb on - strand, within Rru_A1757 at 2050.979 kb on - strand, within Rru_A1757 at 2050.979 kb on - strand, within Rru_A1757 at 2050.979 kb on - strand, within Rru_A1757 at 2051.094 kb on + strand, within Rru_A1757 at 2051.094 kb on + strand, within Rru_A1757 at 2051.094 kb on + strand, within Rru_A1757 at 2051.094 kb on + strand, within Rru_A1757 at 2051.095 kb on - strand, within Rru_A1757 at 2051.095 kb on - strand, within Rru_A1757 at 2051.095 kb on - strand, within Rru_A1757 at 2051.191 kb on + strand, within Rru_A1757 at 2051.191 kb on + strand, within Rru_A1757 at 2051.191 kb on + strand, within Rru_A1757 at 2051.192 kb on - strand, within Rru_A1757 at 2051.192 kb on - strand, within Rru_A1757 at 2051.192 kb on - strand, within Rru_A1757 at 2051.310 kb on + strand, within Rru_A1757 at 2051.311 kb on - strand, within Rru_A1757 at 2051.658 kb on + strand at 2051.782 kb on + strand at 2051.783 kb on - strand at 2051.783 kb on - strand at 2051.783 kb on - strand at 2051.868 kb on - strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.892 kb on - strand at 2051.892 kb on - strand at 2052.082 kb on + strand, within Rru_A1758 at 2052.098 kb on - strand, within Rru_A1758 at 2052.098 kb on - strand, within Rru_A1758 at 2052.222 kb on - strand at 2052.279 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 2,050,094 - -0.0 2,050,099 + -0.0 2,050,100 - -0.0 2,050,100 - -0.0 2,050,255 - -1.6 2,050,255 - -0.6 2,050,327 + Rru_A1757 0.13 -1.2 2,050,327 + Rru_A1757 0.13 -0.0 2,050,327 + Rru_A1757 0.13 -1.0 2,050,327 + Rru_A1757 0.13 -1.0 2,050,327 + Rru_A1757 0.13 -0.0 2,050,327 + Rru_A1757 0.13 -0.0 2,050,327 + Rru_A1757 0.13 -0.0 2,050,328 - Rru_A1757 0.13 -0.0 2,050,328 - Rru_A1757 0.13 -1.1 2,050,329 + Rru_A1757 0.13 -0.0 2,050,329 + Rru_A1757 0.13 -0.0 2,050,330 - Rru_A1757 0.13 -0.0 2,050,717 + Rru_A1757 0.40 -0.0 2,050,717 + Rru_A1757 0.40 -0.0 2,050,717 + Rru_A1757 0.40 -0.0 2,050,717 + Rru_A1757 0.40 -1.0 2,050,717 + Rru_A1757 0.40 -0.0 2,050,717 + Rru_A1757 0.40 -1.3 2,050,717 + Rru_A1757 0.40 -0.0 2,050,717 + Rru_A1757 0.40 -0.0 2,050,717 + Rru_A1757 0.40 -0.6 2,050,717 + Rru_A1757 0.40 -0.7 2,050,717 + Rru_A1757 0.40 -0.0 2,050,718 - Rru_A1757 0.40 -0.0 2,050,718 - Rru_A1757 0.40 -0.0 2,050,718 - Rru_A1757 0.40 -0.9 2,050,747 + Rru_A1757 0.42 -0.9 2,050,748 - Rru_A1757 0.42 -0.0 2,050,748 - Rru_A1757 0.42 -0.0 2,050,748 - Rru_A1757 0.42 -0.0 2,050,816 + Rru_A1757 0.47 -0.0 2,050,978 + Rru_A1757 0.58 -0.0 2,050,979 - Rru_A1757 0.58 -0.0 2,050,979 - Rru_A1757 0.58 -0.0 2,050,979 - Rru_A1757 0.58 -0.0 2,050,979 - Rru_A1757 0.58 -2.4 2,051,094 + Rru_A1757 0.66 -0.0 2,051,094 + Rru_A1757 0.66 -2.0 2,051,094 + Rru_A1757 0.66 -0.0 2,051,094 + Rru_A1757 0.66 -1.1 2,051,095 - Rru_A1757 0.66 -0.0 2,051,095 - Rru_A1757 0.66 -0.0 2,051,095 - Rru_A1757 0.66 -0.0 2,051,191 + Rru_A1757 0.73 -0.0 2,051,191 + Rru_A1757 0.73 +0.9 2,051,191 + Rru_A1757 0.73 -0.8 2,051,192 - Rru_A1757 0.73 -0.8 2,051,192 - Rru_A1757 0.73 -0.0 2,051,192 - Rru_A1757 0.73 -0.7 2,051,310 + Rru_A1757 0.81 -0.0 2,051,311 - Rru_A1757 0.81 -0.0 2,051,658 + -0.0 2,051,782 + -0.0 2,051,783 - -0.0 2,051,783 - -0.9 2,051,783 - -1.0 2,051,868 - -0.9 2,051,891 + -0.4 2,051,891 + -0.0 2,051,891 + -0.0 2,051,891 + -0.0 2,051,891 + -0.0 2,051,891 + -0.0 2,051,891 + -0.0 2,051,892 - -1.2 2,051,892 - -0.0 2,052,082 + Rru_A1758 0.78 -1.2 2,052,098 - Rru_A1758 0.85 -0.0 2,052,098 - Rru_A1758 0.85 -0.0 2,052,222 - -0.0 2,052,279 + -0.0
Or see this region's nucleotide sequence