Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1245

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1243 and Rru_A1244 are separated by 303 nucleotidesRru_A1244 and Rru_A1245 are separated by 76 nucleotidesRru_A1245 and Rru_A1246 are separated by 172 nucleotides Rru_A1243: Rru_A1243 - Cytochrome B561 (NCBI), at 1,465,635 to 1,466,303 _A1243 Rru_A1244: Rru_A1244 - hypothetical protein (NCBI), at 1,466,607 to 1,466,798 _A1244 Rru_A1245: Rru_A1245 - Transcriptional Regulator, Crp/Fnr family (NCBI), at 1,466,875 to 1,467,525 _A1245 Rru_A1246: Rru_A1246 - hypothetical protein (NCBI), at 1,467,698 to 1,468,861 _A1246 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -2 -1 0 1 2at 1465.879 kb on + strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1466.041 kb on + strand, within Rru_A1243at 1466.146 kb on + strand, within Rru_A1243at 1466.147 kb on - strand, within Rru_A1243at 1466.147 kb on - strand, within Rru_A1243at 1466.159 kb on + strand, within Rru_A1243at 1466.160 kb on - strand, within Rru_A1243at 1466.191 kb on + strand, within Rru_A1243at 1466.191 kb on + strand, within Rru_A1243at 1466.192 kb on - strand, within Rru_A1243at 1466.297 kb on + strandat 1466.297 kb on + strandat 1466.298 kb on - strandat 1466.298 kb on - strandat 1466.308 kb on + strandat 1466.408 kb on + strandat 1466.561 kb on + strandat 1466.561 kb on + strandat 1466.562 kb on - strandat 1466.562 kb on - strandat 1466.645 kb on + strand, within Rru_A1244at 1466.645 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.648 kb on - strand, within Rru_A1244at 1466.648 kb on - strand, within Rru_A1244at 1466.648 kb on - strand, within Rru_A1244at 1466.806 kb on + strandat 1466.806 kb on + strandat 1466.806 kb on + strandat 1466.807 kb on - strandat 1466.807 kb on - strandat 1466.814 kb on - strandat 1466.814 kb on - strandat 1467.143 kb on + strand, within Rru_A1245at 1467.143 kb on + strand, within Rru_A1245at 1467.144 kb on - strand, within Rru_A1245at 1467.144 kb on - strand, within Rru_A1245at 1467.144 kb on - strand, within Rru_A1245at 1467.144 kb on - strand, within Rru_A1245at 1467.258 kb on - strand, within Rru_A1245at 1467.289 kb on + strand, within Rru_A1245at 1467.289 kb on + strand, within Rru_A1245at 1467.290 kb on - strand, within Rru_A1245at 1467.290 kb on - strand, within Rru_A1245at 1467.320 kb on + strand, within Rru_A1245at 1467.375 kb on + strand, within Rru_A1245at 1467.389 kb on + strand, within Rru_A1245at 1467.389 kb on + strand, within Rru_A1245at 1467.389 kb on + strand, within Rru_A1245at 1467.389 kb on + strand, within Rru_A1245at 1467.390 kb on - strand, within Rru_A1245at 1467.390 kb on - strand, within Rru_A1245at 1467.390 kb on - strand, within Rru_A1245at 1467.675 kb on + strandat 1467.676 kb on - strandat 1467.676 kb on - strandat 1467.677 kb on + strandat 1467.677 kb on + strandat 1467.677 kb on + strandat 1467.677 kb on + strandat 1467.678 kb on - strandat 1467.678 kb on - strandat 1467.686 kb on - strandat 1467.700 kb on - strandat 1467.700 kb on - strandat 1467.700 kb on - strandat 1467.700 kb on - strandat 1467.723 kb on + strandat 1467.723 kb on + strandat 1467.724 kb on - strandat 1467.724 kb on - strandat 1467.772 kb on + strandat 1467.772 kb on + strandat 1467.772 kb on + strandat 1467.836 kb on - strand, within Rru_A1246at 1467.852 kb on - strand, within Rru_A1246at 1467.978 kb on + strand, within Rru_A1246at 1467.979 kb on - strand, within Rru_A1246at 1467.979 kb on - strand, within Rru_A1246at 1468.045 kb on + strand, within Rru_A1246at 1468.045 kb on + strand, within Rru_A1246at 1468.046 kb on - strand, within Rru_A1246at 1468.046 kb on - strand, within Rru_A1246at 1468.081 kb on - strand, within Rru_A1246at 1468.135 kb on + strand, within Rru_A1246at 1468.146 kb on + strand, within Rru_A1246at 1468.147 kb on - strand, within Rru_A1246at 1468.155 kb on + strand, within Rru_A1246at 1468.344 kb on + strand, within Rru_A1246at 1468.345 kb on - strand, within Rru_A1246at 1468.345 kb on - strand, within Rru_A1246at 1468.345 kb on - strand, within Rru_A1246at 1468.345 kb on - strand, within Rru_A1246at 1468.345 kb on - strand, within Rru_A1246at 1468.361 kb on - strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.365 kb on + strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.366 kb on - strand, within Rru_A1246at 1468.369 kb on + strand, within Rru_A1246at 1468.370 kb on - strand, within Rru_A1246at 1468.370 kb on - strand, within Rru_A1246

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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1,465,879 + Rru_A1243 0.36 -0.1
1,465,880 - Rru_A1243 0.37 -0.1
1,465,880 - Rru_A1243 0.37 -0.1
1,465,880 - Rru_A1243 0.37 -0.1
1,465,880 - Rru_A1243 0.37 -0.7
1,465,880 - Rru_A1243 0.37 -0.1
1,466,041 + Rru_A1243 0.61 -0.1
1,466,146 + Rru_A1243 0.76 -0.1
1,466,147 - Rru_A1243 0.77 +0.2
1,466,147 - Rru_A1243 0.77 -0.1
1,466,159 + Rru_A1243 0.78 -0.6
1,466,160 - Rru_A1243 0.78 -0.1
1,466,191 + Rru_A1243 0.83 -0.1
1,466,191 + Rru_A1243 0.83 -0.1
1,466,192 - Rru_A1243 0.83 -0.1
1,466,297 + -1.1
1,466,297 + -0.1
1,466,298 - -0.1
1,466,298 - -0.1
1,466,308 + -0.1
1,466,408 + -0.1
1,466,561 + -2.0
1,466,561 + -1.1
1,466,562 - -1.1
1,466,562 - -0.1
1,466,645 + Rru_A1244 0.20 -1.1
1,466,645 + Rru_A1244 0.20 -0.1
1,466,647 + Rru_A1244 0.21 -1.5
1,466,647 + Rru_A1244 0.21 -0.1
1,466,647 + Rru_A1244 0.21 -0.1
1,466,647 + Rru_A1244 0.21 -0.1
1,466,647 + Rru_A1244 0.21 -0.1
1,466,648 - Rru_A1244 0.21 -0.1
1,466,648 - Rru_A1244 0.21 -0.1
1,466,648 - Rru_A1244 0.21 -0.1
1,466,806 + -0.1
1,466,806 + -1.1
1,466,806 + -0.1
1,466,807 - -1.0
1,466,807 - -0.1
1,466,814 - -0.1
1,466,814 - -1.5
1,467,143 + Rru_A1245 0.41 -0.1
1,467,143 + Rru_A1245 0.41 -0.5
1,467,144 - Rru_A1245 0.41 -0.1
1,467,144 - Rru_A1245 0.41 -0.1
1,467,144 - Rru_A1245 0.41 -0.1
1,467,144 - Rru_A1245 0.41 -0.8
1,467,258 - Rru_A1245 0.59 -0.1
1,467,289 + Rru_A1245 0.64 -0.1
1,467,289 + Rru_A1245 0.64 -0.1
1,467,290 - Rru_A1245 0.64 -0.2
1,467,290 - Rru_A1245 0.64 -0.1
1,467,320 + Rru_A1245 0.68 -1.0
1,467,375 + Rru_A1245 0.77 -0.1
1,467,389 + Rru_A1245 0.79 -0.1
1,467,389 + Rru_A1245 0.79 -0.1
1,467,389 + Rru_A1245 0.79 -1.0
1,467,389 + Rru_A1245 0.79 -0.1
1,467,390 - Rru_A1245 0.79 -0.1
1,467,390 - Rru_A1245 0.79 -0.1
1,467,390 - Rru_A1245 0.79 -0.2
1,467,675 + -0.1
1,467,676 - -0.1
1,467,676 - -0.1
1,467,677 + -0.1
1,467,677 + -1.1
1,467,677 + -0.1
1,467,677 + -0.1
1,467,678 - -0.5
1,467,678 - +0.0
1,467,686 - -0.7
1,467,700 - -1.0
1,467,700 - -0.1
1,467,700 - -0.1
1,467,700 - -0.1
1,467,723 + -0.1
1,467,723 + -0.7
1,467,724 - -1.1
1,467,724 - -0.1
1,467,772 + -0.1
1,467,772 + -0.1
1,467,772 + -0.1
1,467,836 - Rru_A1246 0.12 -0.1
1,467,852 - Rru_A1246 0.13 -0.1
1,467,978 + Rru_A1246 0.24 -0.1
1,467,979 - Rru_A1246 0.24 -0.1
1,467,979 - Rru_A1246 0.24 -0.1
1,468,045 + Rru_A1246 0.30 -0.1
1,468,045 + Rru_A1246 0.30 -0.7
1,468,046 - Rru_A1246 0.30 +0.4
1,468,046 - Rru_A1246 0.30 -0.6
1,468,081 - Rru_A1246 0.33 -1.0
1,468,135 + Rru_A1246 0.38 -0.1
1,468,146 + Rru_A1246 0.38 -0.1
1,468,147 - Rru_A1246 0.39 -0.1
1,468,155 + Rru_A1246 0.39 -0.1
1,468,344 + Rru_A1246 0.55 -0.1
1,468,345 - Rru_A1246 0.56 -0.1
1,468,345 - Rru_A1246 0.56 -0.1
1,468,345 - Rru_A1246 0.56 -0.1
1,468,345 - Rru_A1246 0.56 -0.1
1,468,345 - Rru_A1246 0.56 -0.1
1,468,361 - Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 +1.9
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.1
1,468,365 + Rru_A1246 0.57 -0.9
1,468,366 - Rru_A1246 0.57 -1.1
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -0.9
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -0.1
1,468,366 - Rru_A1246 0.57 -1.1
1,468,369 + Rru_A1246 0.58 -0.1
1,468,370 - Rru_A1246 0.58 -0.1
1,468,370 - Rru_A1246 0.58 -0.1

Or see this region's nucleotide sequence