Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1152

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1151 and Rru_A1152 are separated by 169 nucleotidesRru_A1152 and 11438809 are separated by 177 nucleotides11438809 and 11581172 overlap by 37 nucleotides11581172 and 11723564 overlap by 37 nucleotides11723564 and 11438810 are separated by 0 nucleotides11438810 and 11581173 overlap by 40 nucleotides11581173 and 11723565 overlap by 40 nucleotides11723565 and 11438811 are separated by 0 nucleotides11438811 and 11581174 overlap by 37 nucleotides11581174 and 11723566 overlap by 37 nucleotides11723566 and 11438812 are separated by 0 nucleotides11438812 and 11581175 overlap by 44 nucleotides11581175 and 11723567 overlap by 44 nucleotides11723567 and 11438813 are separated by 0 nucleotides11438813 and 11581176 overlap by 37 nucleotides11581176 and 11723568 overlap by 37 nucleotides11723568 and 11438814 are separated by 0 nucleotides11438814 and 11581177 overlap by 38 nucleotides11581177 and 11723569 overlap by 38 nucleotides11723569 and 11438815 are separated by 0 nucleotides11438815 and 11581178 overlap by 37 nucleotides11581178 and 11723570 overlap by 37 nucleotides11723570 and 11438816 are separated by 0 nucleotides11438816 and 11581179 overlap by 39 nucleotides11581179 and 11723571 overlap by 39 nucleotides11723571 and 11438817 are separated by 0 nucleotides11438817 and 11581180 overlap by 37 nucleotides11581180 and 11723572 overlap by 37 nucleotides11723572 and 11438818 are separated by 0 nucleotides11438818 and 11581181 overlap by 39 nucleotides11581181 and 11723573 overlap by 39 nucleotides11723573 and 11438819 are separated by 0 nucleotides11438819 and 11581182 overlap by 37 nucleotides11581182 and 11723574 overlap by 37 nucleotides11723574 and 11438820 are separated by 0 nucleotides11438820 and 11581183 overlap by 41 nucleotides11581183 and 11723575 overlap by 41 nucleotides11723575 and 11438821 are separated by 0 nucleotides11438821 and 11581184 overlap by 37 nucleotides11581184 and 11723576 overlap by 37 nucleotides11723576 and 11438822 are separated by 0 nucleotides11438822 and 11581185 overlap by 38 nucleotides11581185 and 11723577 overlap by 38 nucleotides11723577 and 11438823 are separated by 0 nucleotides11438823 and 11581186 overlap by 37 nucleotides11581186 and 11723578 overlap by 37 nucleotides11723578 and Rru_A1153 are separated by 208 nucleotides Rru_A1151: Rru_A1151 - hypothetical protein (NCBI), at 1,360,987 to 1,362,612 _A1151 Rru_A1152: Rru_A1152 - hypothetical protein (NCBI), at 1,362,782 to 1,363,687 _A1152 11438809 - no description, at 1,363,865 to 1,363,901 11438809 11581172 - no description, at 1,363,865 to 1,363,901 11581172 11723564 - no description, at 1,363,865 to 1,363,901 11723564 11438810 - no description, at 1,363,902 to 1,363,941 11438810 11581173 - no description, at 1,363,902 to 1,363,941 11581173 11723565 - no description, at 1,363,902 to 1,363,941 11723565 11438811 - no description, at 1,363,942 to 1,363,978 11438811 11581174 - no description, at 1,363,942 to 1,363,978 11581174 11723566 - no description, at 1,363,942 to 1,363,978 11723566 11438812 - no description, at 1,363,979 to 1,364,022 11438812 11581175 - no description, at 1,363,979 to 1,364,022 11581175 11723567 - no description, at 1,363,979 to 1,364,022 11723567 11438813 - no description, at 1,364,023 to 1,364,059 11438813 11581176 - no description, at 1,364,023 to 1,364,059 11581176 11723568 - no description, at 1,364,023 to 1,364,059 11723568 11438814 - no description, at 1,364,060 to 1,364,097 11438814 11581177 - no description, at 1,364,060 to 1,364,097 11581177 11723569 - no description, at 1,364,060 to 1,364,097 11723569 11438815 - no description, at 1,364,098 to 1,364,134 11438815 11581178 - no description, at 1,364,098 to 1,364,134 11581178 11723570 - no description, at 1,364,098 to 1,364,134 11723570 11438816 - no description, at 1,364,135 to 1,364,173 11438816 11581179 - no description, at 1,364,135 to 1,364,173 11581179 11723571 - no description, at 1,364,135 to 1,364,173 11723571 11438817 - no description, at 1,364,174 to 1,364,210 11438817 11581180 - no description, at 1,364,174 to 1,364,210 11581180 11723572 - no description, at 1,364,174 to 1,364,210 11723572 11438818 - no description, at 1,364,211 to 1,364,249 11438818 11581181 - no description, at 1,364,211 to 1,364,249 11581181 11723573 - no description, at 1,364,211 to 1,364,249 11723573 11438819 - no description, at 1,364,250 to 1,364,286 11438819 11581182 - no description, at 1,364,250 to 1,364,286 11581182 11723574 - no description, at 1,364,250 to 1,364,286 11723574 11438820 - no description, at 1,364,287 to 1,364,327 11438820 11581183 - no description, at 1,364,287 to 1,364,327 11581183 11723575 - no description, at 1,364,287 to 1,364,327 11723575 11438821 - no description, at 1,364,328 to 1,364,364 11438821 11581184 - no description, at 1,364,328 to 1,364,364 11581184 11723576 - no description, at 1,364,328 to 1,364,364 11723576 11438822 - no description, at 1,364,365 to 1,364,402 11438822 11581185 - no description, at 1,364,365 to 1,364,402 11581185 11723577 - no description, at 1,364,365 to 1,364,402 11723577 11438823 - no description, at 1,364,403 to 1,364,439 11438823 11581186 - no description, at 1,364,403 to 1,364,439 11581186 11723578 - no description, at 1,364,403 to 1,364,439 11723578 Rru_A1153: Rru_A1153 - Protein of unknown function DUF196 (NCBI), at 1,364,648 to 1,365,022 _A1153 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -2 -1 0 1 2at 1361.885 kb on + strand, within Rru_A1151at 1361.886 kb on - strand, within Rru_A1151at 1361.946 kb on + strand, within Rru_A1151at 1361.946 kb on + strand, within Rru_A1151at 1361.946 kb on + strand, within Rru_A1151at 1361.946 kb on + strand, within Rru_A1151at 1361.946 kb on + strand, within Rru_A1151at 1361.947 kb on - strand, within Rru_A1151at 1362.433 kb on - strand, within Rru_A1151at 1362.459 kb on - strandat 1362.601 kb on + strandat 1362.783 kb on + strandat 1362.833 kb on + strandat 1362.833 kb on + strandat 1362.945 kb on + strand, within Rru_A1152at 1362.946 kb on - strand, within Rru_A1152at 1362.946 kb on - strand, within Rru_A1152at 1363.097 kb on - strand, within Rru_A1152at 1363.437 kb on + strand, within Rru_A1152at 1363.438 kb on - strand, within Rru_A1152at 1363.438 kb on - strand, within Rru_A1152at 1363.497 kb on + strand, within Rru_A1152at 1363.497 kb on + strand, within Rru_A1152at 1363.497 kb on + strand, within Rru_A1152at 1363.498 kb on - strand, within Rru_A1152at 1363.695 kb on + strandat 1363.696 kb on - strandat 1363.858 kb on + strandat 1363.859 kb on - strandat 1363.891 kb on + strandat 1363.892 kb on - strandat 1363.892 kb on - strandat 1363.910 kb on + strandat 1363.910 kb on + strandat 1363.911 kb on - strandat 1363.968 kb on + strandat 1363.969 kb on - strandat 1363.969 kb on - strandat 1363.969 kb on - strandat 1363.969 kb on - strandat 1363.981 kb on + strandat 1363.981 kb on + strandat 1363.982 kb on - strandat 1363.982 kb on - strandat 1363.982 kb on - strandat 1364.049 kb on + strandat 1364.050 kb on - strandat 1364.050 kb on - strandat 1364.124 kb on + strandat 1364.125 kb on - strandat 1364.125 kb on - strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.276 kb on + strandat 1364.276 kb on + strandat 1364.276 kb on + strandat 1364.277 kb on - strandat 1364.277 kb on - strandat 1364.354 kb on + strandat 1364.354 kb on + strandat 1364.354 kb on + strandat 1364.355 kb on - strandat 1364.355 kb on - strandat 1364.429 kb on + strandat 1364.429 kb on + strandat 1364.515 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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1,361,885 + Rru_A1151 0.55 -0.0
1,361,886 - Rru_A1151 0.55 -0.9
1,361,946 + Rru_A1151 0.59 -0.0
1,361,946 + Rru_A1151 0.59 -0.0
1,361,946 + Rru_A1151 0.59 -0.4
1,361,946 + Rru_A1151 0.59 -0.0
1,361,946 + Rru_A1151 0.59 -0.0
1,361,947 - Rru_A1151 0.59 -0.0
1,362,433 - Rru_A1151 0.89 -0.0
1,362,459 - -1.2
1,362,601 + -1.5
1,362,783 + -1.2
1,362,833 + -0.0
1,362,833 + -0.0
1,362,945 + Rru_A1152 0.18 -0.0
1,362,946 - Rru_A1152 0.18 -0.0
1,362,946 - Rru_A1152 0.18 -0.0
1,363,097 - Rru_A1152 0.35 -0.0
1,363,437 + Rru_A1152 0.72 -0.0
1,363,438 - Rru_A1152 0.72 -0.0
1,363,438 - Rru_A1152 0.72 -2.3
1,363,497 + Rru_A1152 0.79 -0.0
1,363,497 + Rru_A1152 0.79 -0.0
1,363,497 + Rru_A1152 0.79 -0.0
1,363,498 - Rru_A1152 0.79 -1.5
1,363,695 + -1.5
1,363,696 - -0.0
1,363,858 + -0.0
1,363,859 - -1.6
1,363,891 + -0.0
1,363,892 - -0.0
1,363,892 - -0.0
1,363,910 + -1.0
1,363,910 + -0.0
1,363,911 - -0.0
1,363,968 + -1.3
1,363,969 - -0.0
1,363,969 - -0.0
1,363,969 - -0.0
1,363,969 - +2.0
1,363,981 + -0.0
1,363,981 + -0.0
1,363,982 - -0.0
1,363,982 - -0.0
1,363,982 - -0.0
1,364,049 + -0.0
1,364,050 - -2.1
1,364,050 - -0.0
1,364,124 + -1.6
1,364,125 - -0.6
1,364,125 - -0.0
1,364,212 + -0.0
1,364,212 + -1.6
1,364,213 - -0.0
1,364,213 - -0.0
1,364,213 - -0.0
1,364,213 - -1.3
1,364,213 - -0.0
1,364,276 + -1.1
1,364,276 + -1.6
1,364,276 + -0.0
1,364,277 - -1.1
1,364,277 - -0.0
1,364,354 + -0.7
1,364,354 + -0.0
1,364,354 + -1.4
1,364,355 - -0.0
1,364,355 - -0.0
1,364,429 + -0.0
1,364,429 + -0.0
1,364,515 + -0.9

Or see this region's nucleotide sequence