Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1018

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1017 and Rru_A1018 are separated by 98 nucleotidesRru_A1018 and Rru_A1019 are separated by 233 nucleotides Rru_A1017: Rru_A1017 - Spermidine/putrescine ABC transporter ATP-binding subunit (NCBI), at 1,205,378 to 1,206,544 _A1017 Rru_A1018: Rru_A1018 - extracellular solute-binding protein, family 1 (NCBI), at 1,206,643 to 1,207,752 _A1018 Rru_A1019: Rru_A1019 - FAD dependent oxidoreductase (NCBI), at 1,207,986 to 1,209,260 _A1019 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -3 -2 -1 0 1at 1205.673 kb on + strand, within Rru_A1017at 1205.674 kb on - strand, within Rru_A1017at 1205.674 kb on - strand, within Rru_A1017at 1205.674 kb on - strand, within Rru_A1017at 1205.794 kb on - strand, within Rru_A1017at 1205.794 kb on - strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.968 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.213 kb on + strand, within Rru_A1017at 1206.213 kb on + strand, within Rru_A1017at 1206.213 kb on + strand, within Rru_A1017at 1206.213 kb on + strand, within Rru_A1017at 1206.214 kb on - strand, within Rru_A1017at 1206.214 kb on - strand, within Rru_A1017at 1206.214 kb on - strand, within Rru_A1017at 1206.214 kb on - strand, within Rru_A1017at 1206.561 kb on - strandat 1206.644 kb on + strandat 1206.644 kb on + strandat 1206.644 kb on + strandat 1206.644 kb on + strandat 1206.644 kb on + strandat 1206.645 kb on - strandat 1206.645 kb on - strandat 1206.645 kb on - strandat 1206.645 kb on - strandat 1206.645 kb on - strandat 1206.749 kb on + strandat 1206.750 kb on - strandat 1206.750 kb on - strandat 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.825 kb on - strand, within Rru_A1018at 1206.876 kb on + strand, within Rru_A1018at 1206.876 kb on + strand, within Rru_A1018at 1206.876 kb on + strand, within Rru_A1018at 1206.959 kb on + strand, within Rru_A1018at 1206.959 kb on + strand, within Rru_A1018at 1207.020 kb on + strand, within Rru_A1018at 1207.021 kb on - strand, within Rru_A1018at 1207.103 kb on + strand, within Rru_A1018at 1207.103 kb on + strand, within Rru_A1018at 1207.104 kb on - strand, within Rru_A1018at 1207.104 kb on - strand, within Rru_A1018at 1207.104 kb on - strand, within Rru_A1018at 1207.181 kb on + strand, within Rru_A1018at 1207.181 kb on + strand, within Rru_A1018at 1207.182 kb on - strand, within Rru_A1018at 1207.182 kb on - strand, within Rru_A1018at 1207.182 kb on - strand, within Rru_A1018at 1207.182 kb on - strand, within Rru_A1018at 1207.361 kb on + strand, within Rru_A1018at 1207.362 kb on - strand, within Rru_A1018at 1207.391 kb on + strand, within Rru_A1018at 1207.574 kb on + strand, within Rru_A1018at 1207.584 kb on - strand, within Rru_A1018at 1207.584 kb on - strand, within Rru_A1018at 1207.584 kb on - strand, within Rru_A1018at 1207.584 kb on - strand, within Rru_A1018at 1207.640 kb on + strand, within Rru_A1018at 1207.640 kb on + strand, within Rru_A1018at 1207.641 kb on - strand, within Rru_A1018at 1207.641 kb on - strand, within Rru_A1018at 1207.653 kb on + strandat 1207.654 kb on - strandat 1207.654 kb on - strandat 1207.654 kb on - strandat 1207.654 kb on - strandat 1207.654 kb on - strandat 1207.654 kb on - strandat 1207.654 kb on - strandat 1207.655 kb on + strandat 1207.655 kb on + strandat 1207.655 kb on + strandat 1207.656 kb on - strandat 1207.656 kb on - strandat 1207.656 kb on - strandat 1207.775 kb on + strandat 1207.775 kb on + strandat 1207.776 kb on - strandat 1207.776 kb on - strandat 1207.796 kb on + strandat 1207.796 kb on + strandat 1207.796 kb on + strandat 1207.796 kb on + strandat 1207.796 kb on + strandat 1207.796 kb on + strandat 1207.797 kb on - strandat 1207.797 kb on - strandat 1207.797 kb on - strandat 1207.826 kb on + strandat 1207.826 kb on + strandat 1207.826 kb on + strandat 1207.826 kb on + strandat 1207.925 kb on + strandat 1207.925 kb on + strandat 1207.926 kb on - strandat 1207.926 kb on - strandat 1207.974 kb on + strandat 1207.975 kb on - strandat 1207.976 kb on + strandat 1207.976 kb on + strandat 1207.976 kb on + strandat 1207.976 kb on + strandat 1207.976 kb on + strandat 1207.976 kb on + strandat 1207.977 kb on - strandat 1208.541 kb on + strand, within Rru_A1019at 1208.541 kb on + strand, within Rru_A1019at 1208.543 kb on + strand, within Rru_A1019at 1208.697 kb on + strand, within Rru_A1019at 1208.697 kb on + strand, within Rru_A1019at 1208.698 kb on - strand, within Rru_A1019at 1208.751 kb on + strand, within Rru_A1019at 1208.752 kb on - strand, within Rru_A1019at 1208.752 kb on - strand, within Rru_A1019at 1208.752 kb on - strand, within Rru_A1019at 1208.752 kb on - strand, within Rru_A1019

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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1,205,673 + Rru_A1017 0.25 -1.2
1,205,674 - Rru_A1017 0.25 -1.9
1,205,674 - Rru_A1017 0.25 +0.0
1,205,674 - Rru_A1017 0.25 +0.0
1,205,794 - Rru_A1017 0.36 +0.0
1,205,794 - Rru_A1017 0.36 -2.2
1,205,799 + Rru_A1017 0.36 +0.0
1,205,799 + Rru_A1017 0.36 +0.0
1,205,799 + Rru_A1017 0.36 +0.0
1,205,799 + Rru_A1017 0.36 +0.0
1,205,799 + Rru_A1017 0.36 +0.0
1,205,799 + Rru_A1017 0.36 +0.0
1,205,799 + Rru_A1017 0.36 -1.0
1,205,799 + Rru_A1017 0.36 +0.0
1,205,799 + Rru_A1017 0.36 +0.3
1,205,800 - Rru_A1017 0.36 -1.0
1,205,800 - Rru_A1017 0.36 +0.0
1,205,800 - Rru_A1017 0.36 -0.5
1,205,800 - Rru_A1017 0.36 +0.0
1,205,800 - Rru_A1017 0.36 +0.0
1,205,800 - Rru_A1017 0.36 +0.0
1,205,800 - Rru_A1017 0.36 +0.0
1,205,800 - Rru_A1017 0.36 -1.4
1,205,968 + Rru_A1017 0.51 +0.0
1,206,196 + Rru_A1017 0.70 -1.2
1,206,196 + Rru_A1017 0.70 +0.0
1,206,196 + Rru_A1017 0.70 +0.0
1,206,196 + Rru_A1017 0.70 -0.8
1,206,196 + Rru_A1017 0.70 +0.0
1,206,196 + Rru_A1017 0.70 +0.0
1,206,197 - Rru_A1017 0.70 +0.0
1,206,197 - Rru_A1017 0.70 +0.0
1,206,197 - Rru_A1017 0.70 +0.0
1,206,197 - Rru_A1017 0.70 +0.0
1,206,197 - Rru_A1017 0.70 -1.6
1,206,213 + Rru_A1017 0.72 +0.0
1,206,213 + Rru_A1017 0.72 +0.0
1,206,213 + Rru_A1017 0.72 +0.0
1,206,213 + Rru_A1017 0.72 +0.0
1,206,214 - Rru_A1017 0.72 +0.0
1,206,214 - Rru_A1017 0.72 -1.0
1,206,214 - Rru_A1017 0.72 -0.4
1,206,214 - Rru_A1017 0.72 -0.2
1,206,561 - +0.0
1,206,644 + +0.0
1,206,644 + +0.0
1,206,644 + +0.0
1,206,644 + -1.0
1,206,644 + +0.0
1,206,645 - +0.0
1,206,645 - +0.0
1,206,645 - +0.0
1,206,645 - +0.0
1,206,645 - +0.0
1,206,749 + +0.0
1,206,750 - +0.0
1,206,750 - +0.0
1,206,824 + Rru_A1018 0.16 -1.9
1,206,824 + Rru_A1018 0.16 +0.0
1,206,824 + Rru_A1018 0.16 +0.0
1,206,824 + Rru_A1018 0.16 -2.1
1,206,824 + Rru_A1018 0.16 -1.1
1,206,824 + Rru_A1018 0.16 +0.0
1,206,825 - Rru_A1018 0.16 -1.4
1,206,876 + Rru_A1018 0.21 +0.0
1,206,876 + Rru_A1018 0.21 +0.0
1,206,876 + Rru_A1018 0.21 +0.0
1,206,959 + Rru_A1018 0.28 +0.0
1,206,959 + Rru_A1018 0.28 +0.0
1,207,020 + Rru_A1018 0.34 -1.5
1,207,021 - Rru_A1018 0.34 +0.0
1,207,103 + Rru_A1018 0.41 +0.0
1,207,103 + Rru_A1018 0.41 +0.0
1,207,104 - Rru_A1018 0.42 +0.0
1,207,104 - Rru_A1018 0.42 -2.7
1,207,104 - Rru_A1018 0.42 +0.0
1,207,181 + Rru_A1018 0.48 -2.7
1,207,181 + Rru_A1018 0.48 +0.0
1,207,182 - Rru_A1018 0.49 -1.5
1,207,182 - Rru_A1018 0.49 +0.0
1,207,182 - Rru_A1018 0.49 +0.0
1,207,182 - Rru_A1018 0.49 +0.0
1,207,361 + Rru_A1018 0.65 +0.0
1,207,362 - Rru_A1018 0.65 +0.0
1,207,391 + Rru_A1018 0.67 -1.0
1,207,574 + Rru_A1018 0.84 +0.0
1,207,584 - Rru_A1018 0.85 +0.0
1,207,584 - Rru_A1018 0.85 +0.0
1,207,584 - Rru_A1018 0.85 +1.6
1,207,584 - Rru_A1018 0.85 +0.0
1,207,640 + Rru_A1018 0.90 -1.0
1,207,640 + Rru_A1018 0.90 +0.0
1,207,641 - Rru_A1018 0.90 -1.0
1,207,641 - Rru_A1018 0.90 +0.0
1,207,653 + -1.3
1,207,654 - +0.0
1,207,654 - +0.0
1,207,654 - +0.0
1,207,654 - +0.0
1,207,654 - -2.3
1,207,654 - -1.8
1,207,654 - -0.9
1,207,655 + -1.0
1,207,655 + +0.0
1,207,655 + +0.0
1,207,656 - +0.0
1,207,656 - -1.4
1,207,656 - -1.2
1,207,775 + +0.0
1,207,775 + +0.0
1,207,776 - -1.2
1,207,776 - -0.5
1,207,796 + +0.0
1,207,796 + +0.0
1,207,796 + +0.0
1,207,796 + +0.0
1,207,796 + +0.0
1,207,796 + -2.9
1,207,797 - +0.0
1,207,797 - -0.8
1,207,797 - +0.0
1,207,826 + +0.0
1,207,826 + +0.0
1,207,826 + +0.0
1,207,826 + -1.0
1,207,925 + +0.0
1,207,925 + +0.0
1,207,926 - -0.9
1,207,926 - +0.0
1,207,974 + -0.7
1,207,975 - +0.0
1,207,976 + +0.0
1,207,976 + +0.0
1,207,976 + +0.0
1,207,976 + +0.0
1,207,976 + -1.3
1,207,976 + +0.0
1,207,977 - +0.0
1,208,541 + Rru_A1019 0.44 +0.0
1,208,541 + Rru_A1019 0.44 +0.0
1,208,543 + Rru_A1019 0.44 -1.0
1,208,697 + Rru_A1019 0.56 -1.1
1,208,697 + Rru_A1019 0.56 -1.0
1,208,698 - Rru_A1019 0.56 -1.0
1,208,751 + Rru_A1019 0.60 -1.0
1,208,752 - Rru_A1019 0.60 -1.0
1,208,752 - Rru_A1019 0.60 +0.0
1,208,752 - Rru_A1019 0.60 -1.6
1,208,752 - Rru_A1019 0.60 +0.0

Or see this region's nucleotide sequence