Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0714

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0713 and Rru_A0714 are separated by 195 nucleotidesRru_A0714 and Rru_A0715 are separated by 32 nucleotides Rru_A0713: Rru_A0713 - Protein of unknown function DUF833 (NCBI), at 840,422 to 841,198 _A0713 Rru_A0714: Rru_A0714 - Protein of unknown function DUF1476 (NCBI), at 841,394 to 841,732 _A0714 Rru_A0715: Rru_A0715 - Mg2+ transporter protein, CorA-like (NCBI), at 841,765 to 842,805 _A0715 Position (kb) 841 842Strain fitness (log2 ratio) -2 -1 0 1at 840.456 kb on + strandat 840.457 kb on - strandat 840.489 kb on - strandat 840.492 kb on + strandat 840.492 kb on + strandat 840.492 kb on + strandat 840.493 kb on - strandat 840.867 kb on + strand, within Rru_A0713at 840.923 kb on - strand, within Rru_A0713at 841.192 kb on + strandat 841.192 kb on + strandat 841.193 kb on - strandat 841.193 kb on - strandat 841.193 kb on - strandat 841.283 kb on - strandat 841.287 kb on + strandat 841.287 kb on + strandat 841.287 kb on + strandat 841.288 kb on - strandat 841.293 kb on + strandat 841.305 kb on - strandat 841.362 kb on - strandat 841.439 kb on + strand, within Rru_A0714at 841.440 kb on - strand, within Rru_A0714at 841.440 kb on - strand, within Rru_A0714at 841.440 kb on - strand, within Rru_A0714at 841.548 kb on - strand, within Rru_A0714at 841.642 kb on + strand, within Rru_A0714at 841.788 kb on + strandat 841.788 kb on + strandat 841.789 kb on - strandat 841.790 kb on + strandat 841.790 kb on + strandat 841.790 kb on + strandat 841.791 kb on - strandat 841.791 kb on - strandat 841.946 kb on + strand, within Rru_A0715at 841.946 kb on + strand, within Rru_A0715at 842.040 kb on - strand, within Rru_A0715at 842.040 kb on - strand, within Rru_A0715at 842.261 kb on + strand, within Rru_A0715at 842.261 kb on + strand, within Rru_A0715at 842.261 kb on + strand, within Rru_A0715at 842.261 kb on + strand, within Rru_A0715at 842.262 kb on - strand, within Rru_A0715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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840,456 + +0.0
840,457 - +0.0
840,489 - +0.0
840,492 + -1.7
840,492 + +0.0
840,492 + +0.0
840,493 - +0.0
840,867 + Rru_A0713 0.57 +0.0
840,923 - Rru_A0713 0.64 +0.0
841,192 + +0.0
841,192 + +0.0
841,193 - +0.0
841,193 - +0.0
841,193 - +0.0
841,283 - +0.0
841,287 + -2.0
841,287 + -1.0
841,287 + +0.0
841,288 - -0.6
841,293 + +0.0
841,305 - -2.4
841,362 - +0.0
841,439 + Rru_A0714 0.13 -2.2
841,440 - Rru_A0714 0.14 -1.3
841,440 - Rru_A0714 0.14 -1.6
841,440 - Rru_A0714 0.14 +0.0
841,548 - Rru_A0714 0.45 -1.0
841,642 + Rru_A0714 0.73 -1.1
841,788 + +0.0
841,788 + +0.0
841,789 - -1.0
841,790 + +0.0
841,790 + +0.0
841,790 + +0.0
841,791 - +0.0
841,791 - +0.0
841,946 + Rru_A0715 0.17 +0.0
841,946 + Rru_A0715 0.17 -1.5
842,040 - Rru_A0715 0.26 +0.0
842,040 - Rru_A0715 0.26 -0.6
842,261 + Rru_A0715 0.48 -1.8
842,261 + Rru_A0715 0.48 +0.0
842,261 + Rru_A0715 0.48 +0.0
842,261 + Rru_A0715 0.48 +0.0
842,262 - Rru_A0715 0.48 +0.0

Or see this region's nucleotide sequence