Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0631 and Rru_A0632 are separated by 435 nucleotides Rru_A0632 and Rru_A0633 are separated by 12 nucleotides Rru_A0633 and Rru_A0634 are separated by 11 nucleotides
Rru_A0631: Rru_A0631 - Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI), at 749,503 to 750,855
_A0631
Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501
_A0632
Rru_A0633: Rru_A0633 - Exonuclease (NCBI), at 753,514 to 754,143
_A0633
Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969
_A0634
Position (kb) 751
752
753
754 Strain fitness (log2 ratio) -1
0
1 at 750.331 kb on - strand, within Rru_A0631 at 750.861 kb on - strand at 750.862 kb on + strand at 750.862 kb on + strand at 750.863 kb on - strand at 750.868 kb on - strand at 750.902 kb on + strand at 750.902 kb on + strand at 750.904 kb on + strand at 750.904 kb on + strand at 750.904 kb on + strand at 750.904 kb on + strand at 750.905 kb on - strand at 750.905 kb on - strand at 750.905 kb on - strand at 751.011 kb on + strand at 751.012 kb on - strand at 751.061 kb on + strand at 751.061 kb on + strand at 751.062 kb on - strand at 751.062 kb on - strand at 751.105 kb on + strand at 751.105 kb on + strand at 751.105 kb on + strand at 751.106 kb on - strand at 751.106 kb on - strand at 751.106 kb on - strand at 751.222 kb on + strand at 751.239 kb on - strand at 751.241 kb on + strand at 751.241 kb on + strand at 751.242 kb on - strand at 751.264 kb on + strand at 751.264 kb on + strand at 751.264 kb on + strand at 751.265 kb on - strand at 751.265 kb on - strand at 751.265 kb on - strand at 751.337 kb on - strand at 751.419 kb on - strand at 751.625 kb on - strand, within Rru_A0632 at 751.656 kb on + strand, within Rru_A0632 at 751.656 kb on + strand, within Rru_A0632 at 751.799 kb on - strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.847 kb on - strand, within Rru_A0632 at 751.847 kb on - strand, within Rru_A0632 at 751.847 kb on - strand, within Rru_A0632 at 751.847 kb on - strand, within Rru_A0632 at 751.894 kb on + strand, within Rru_A0632 at 751.894 kb on + strand, within Rru_A0632 at 751.894 kb on + strand, within Rru_A0632 at 751.894 kb on + strand, within Rru_A0632 at 751.894 kb on + strand, within Rru_A0632 at 751.894 kb on + strand, within Rru_A0632 at 751.894 kb on + strand, within Rru_A0632 at 751.895 kb on - strand, within Rru_A0632 at 751.895 kb on - strand, within Rru_A0632 at 751.895 kb on - strand, within Rru_A0632 at 753.048 kb on + strand, within Rru_A0632 at 753.049 kb on - strand, within Rru_A0632 at 753.156 kb on + strand, within Rru_A0632 at 753.156 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.433 kb on + strand at 753.433 kb on + strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.554 kb on + strand at 753.554 kb on + strand at 753.554 kb on + strand at 753.555 kb on - strand at 753.555 kb on - strand at 753.661 kb on - strand, within Rru_A0633 at 753.661 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.791 kb on + strand, within Rru_A0633 at 753.792 kb on - strand, within Rru_A0633 at 753.794 kb on + strand, within Rru_A0633 at 753.795 kb on - strand, within Rru_A0633 at 753.795 kb on - strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.088 kb on + strand at 754.088 kb on + strand at 754.088 kb on + strand at 754.089 kb on - strand at 754.089 kb on - strand at 754.089 kb on - strand at 754.156 kb on + strand at 754.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 750,331 - Rru_A0631 0.61 -0.1 750,861 - -0.1 750,862 + -0.1 750,862 + -0.1 750,863 - -1.3 750,868 - -0.1 750,902 + -0.1 750,902 + -0.1 750,904 + -0.8 750,904 + -0.1 750,904 + -0.1 750,904 + -1.0 750,905 - -1.1 750,905 - -0.1 750,905 - -0.1 751,011 + -0.1 751,012 - -0.1 751,061 + -0.6 751,061 + -0.1 751,062 - -1.1 751,062 - -1.3 751,105 + -0.1 751,105 + -0.9 751,105 + -0.1 751,106 - -1.3 751,106 - -0.1 751,106 - -0.8 751,222 + +0.1 751,239 - -0.7 751,241 + -0.6 751,241 + -1.1 751,242 - -0.1 751,264 + -0.6 751,264 + -1.0 751,264 + -0.9 751,265 - -0.1 751,265 - -0.1 751,265 - -0.1 751,337 - -0.1 751,419 - -1.4 751,625 - Rru_A0632 0.15 -0.8 751,656 + Rru_A0632 0.17 -0.1 751,656 + Rru_A0632 0.17 -0.6 751,799 - Rru_A0632 0.23 -0.1 751,846 + Rru_A0632 0.25 -1.2 751,846 + Rru_A0632 0.25 -0.1 751,846 + Rru_A0632 0.25 -0.1 751,846 + Rru_A0632 0.25 -0.1 751,846 + Rru_A0632 0.25 -0.1 751,847 - Rru_A0632 0.25 -1.5 751,847 - Rru_A0632 0.25 -0.1 751,847 - Rru_A0632 0.25 -0.1 751,847 - Rru_A0632 0.25 -0.1 751,894 + Rru_A0632 0.27 -0.1 751,894 + Rru_A0632 0.27 -0.7 751,894 + Rru_A0632 0.27 -0.1 751,894 + Rru_A0632 0.27 -0.1 751,894 + Rru_A0632 0.27 -0.5 751,894 + Rru_A0632 0.27 -0.1 751,894 + Rru_A0632 0.27 -1.4 751,895 - Rru_A0632 0.27 -0.1 751,895 - Rru_A0632 0.27 -0.1 751,895 - Rru_A0632 0.27 -0.1 753,048 + Rru_A0632 0.79 -0.1 753,049 - Rru_A0632 0.80 -0.1 753,156 + Rru_A0632 0.84 -0.1 753,156 + Rru_A0632 0.84 -0.8 753,166 + Rru_A0632 0.85 -0.7 753,166 + Rru_A0632 0.85 -0.7 753,166 + Rru_A0632 0.85 -0.1 753,433 + -0.1 753,433 + -0.1 753,434 - -0.1 753,434 - -1.4 753,434 - -0.1 753,434 - -1.1 753,434 - -0.1 753,434 - -1.3 753,434 - -0.1 753,434 - -0.1 753,434 - -1.1 753,554 + -0.6 753,554 + -0.1 753,554 + -0.1 753,555 - -0.1 753,555 - -0.1 753,661 - Rru_A0633 0.23 -0.3 753,661 - Rru_A0633 0.23 -0.1 753,663 - Rru_A0633 0.24 -0.1 753,663 - Rru_A0633 0.24 -0.1 753,663 - Rru_A0633 0.24 -0.1 753,791 + Rru_A0633 0.44 -0.1 753,792 - Rru_A0633 0.44 -0.1 753,794 + Rru_A0633 0.44 -0.1 753,795 - Rru_A0633 0.45 -0.1 753,795 - Rru_A0633 0.45 -1.6 754,051 + Rru_A0633 0.85 -0.6 754,051 + Rru_A0633 0.85 -0.1 754,051 + Rru_A0633 0.85 -0.4 754,051 + Rru_A0633 0.85 -0.1 754,088 + -1.3 754,088 + -0.1 754,088 + -0.1 754,089 - -0.1 754,089 - -1.1 754,089 - -0.1 754,156 + -0.1 754,235 + -0.1
Or see this region's nucleotide sequence