Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0440 and Rru_A0441 are separated by 170 nucleotides Rru_A0441 and Rru_A0442 are separated by 22 nucleotides
Rru_A0440: Rru_A0440 - Xylose isomerase-like TIM barrel (NCBI), at 517,462 to 518,433
_A0440
Rru_A0441: Rru_A0441 - chemotaxis sensory transducer (NCBI), at 518,604 to 520,565
_A0441
Rru_A0442: Rru_A0442 - FAD linked oxidase-like (NCBI), at 520,588 to 522,024
_A0442
Position (kb) 518
519
520
521 Strain fitness (log2 ratio) -1
0
1
2 at 517.929 kb on + strand, within Rru_A0440 at 517.929 kb on + strand, within Rru_A0440 at 518.055 kb on + strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.383 kb on - strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.539 kb on - strand at 518.563 kb on + strand at 518.563 kb on + strand at 518.563 kb on + strand at 518.564 kb on - strand at 519.084 kb on + strand, within Rru_A0441 at 519.084 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.345 kb on + strand, within Rru_A0441 at 519.345 kb on + strand, within Rru_A0441 at 519.346 kb on - strand, within Rru_A0441 at 520.564 kb on - strand at 520.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 517,929 + Rru_A0440 0.48 -0.0 517,929 + Rru_A0440 0.48 -0.0 518,055 + Rru_A0440 0.61 -0.0 518,056 - Rru_A0440 0.61 -0.0 518,056 - Rru_A0440 0.61 -0.0 518,383 - -0.0 518,477 + -0.0 518,477 + -0.0 518,477 + -1.0 518,477 + -0.0 518,539 - -0.0 518,563 + -0.0 518,563 + -1.7 518,563 + -0.0 518,564 - -0.0 519,084 + Rru_A0441 0.24 -1.6 519,084 + Rru_A0441 0.24 -0.0 519,270 + Rru_A0441 0.34 -1.2 519,270 + Rru_A0441 0.34 -1.4 519,270 + Rru_A0441 0.34 -0.0 519,271 - Rru_A0441 0.34 -0.0 519,271 - Rru_A0441 0.34 -1.4 519,271 - Rru_A0441 0.34 -0.0 519,271 - Rru_A0441 0.34 -1.2 519,271 - Rru_A0441 0.34 -0.0 519,345 + Rru_A0441 0.38 -1.5 519,345 + Rru_A0441 0.38 -0.0 519,346 - Rru_A0441 0.38 -0.0 520,564 - -0.0 520,564 - +2.3
Or see this region's nucleotide sequence