Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0334 and Rru_A0335 are separated by 148 nucleotides Rru_A0335 and Rru_AR0014 are separated by 92 nucleotides Rru_AR0014 and Rru_A0336 are separated by 141 nucleotides
Rru_A0334: Rru_A0334 - Transcriptional Regulator, LysR family (NCBI), at 405,956 to 406,918
_A0334
Rru_A0335: Rru_A0335 - YbaK/prolyl-tRNA synthetase associated region (NCBI), at 407,067 to 407,606
_A0335
Rru_AR0014: Rru_AR0014 - tRNA-Ser (NCBI), at 407,699 to 407,790
_AR0014
Rru_A0336: Rru_A0336 - hypothetical protein (NCBI), at 407,932 to 408,774
_A0336
Position (kb) 407
408 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.320 kb on - strand, within Rru_A0334 at 407.025 kb on + strand at 407.025 kb on + strand at 407.026 kb on - strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.133 kb on - strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.604 kb on + strand at 407.608 kb on + strand at 407.888 kb on + strand at 407.908 kb on + strand at 408.020 kb on - strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.266 kb on - strand, within Rru_A0336 at 408.266 kb on - strand, within Rru_A0336 at 408.398 kb on - strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.539 kb on + strand, within Rru_A0336 at 408.542 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.560 kb on - strand, within Rru_A0336
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,281 - Rru_A0334 0.34 -0.0 406,281 - Rru_A0334 0.34 -3.3 406,281 - Rru_A0334 0.34 -0.0 406,319 + Rru_A0334 0.38 -1.0 406,319 + Rru_A0334 0.38 -0.0 406,320 - Rru_A0334 0.38 -0.0 407,025 + -0.0 407,025 + -2.0 407,026 - -0.0 407,059 + -0.0 407,059 + -0.0 407,060 - -0.0 407,060 - -0.9 407,132 + Rru_A0335 0.12 -0.7 407,132 + Rru_A0335 0.12 -0.0 407,132 + Rru_A0335 0.12 -0.0 407,132 + Rru_A0335 0.12 -0.0 407,133 - Rru_A0335 0.12 -0.0 407,180 + Rru_A0335 0.21 -0.0 407,180 + Rru_A0335 0.21 -0.3 407,180 + Rru_A0335 0.21 -0.0 407,604 + -0.5 407,608 + -0.9 407,888 + -0.0 407,908 + -0.6 408,020 - Rru_A0336 0.10 -0.0 408,265 + Rru_A0336 0.40 -0.0 408,265 + Rru_A0336 0.40 -0.0 408,265 + Rru_A0336 0.40 -5.1 408,266 - Rru_A0336 0.40 -0.0 408,266 - Rru_A0336 0.40 -0.0 408,398 - Rru_A0336 0.55 -0.0 408,520 + Rru_A0336 0.70 -0.0 408,520 + Rru_A0336 0.70 -0.0 408,520 + Rru_A0336 0.70 -0.0 408,520 + Rru_A0336 0.70 -1.0 408,521 - Rru_A0336 0.70 -0.0 408,521 - Rru_A0336 0.70 -1.5 408,521 - Rru_A0336 0.70 -0.0 408,521 - Rru_A0336 0.70 -1.0 408,521 - Rru_A0336 0.70 -0.0 408,521 - Rru_A0336 0.70 -0.0 408,521 - Rru_A0336 0.70 -0.0 408,521 - Rru_A0336 0.70 -1.5 408,521 - Rru_A0336 0.70 -0.0 408,539 + Rru_A0336 0.72 -0.0 408,542 + Rru_A0336 0.72 -1.1 408,559 + Rru_A0336 0.74 -1.0 408,559 + Rru_A0336 0.74 -0.0 408,559 + Rru_A0336 0.74 -0.0 408,560 - Rru_A0336 0.74 -0.0
Or see this region's nucleotide sequence