Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0308 and Rru_A0309 are separated by 492 nucleotides Rru_A0309 and Rru_A0310 are separated by 17 nucleotides
Rru_A0308: Rru_A0308 - Hydrogenase maturation protein HypF (NCBI), at 374,425 to 376,731
_A0308
Rru_A0309: Rru_A0309 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 377,224 to 377,862
_A0309
Rru_A0310: Rru_A0310 - Ferredoxin hydrogenase (NCBI), at 377,880 to 379,268
_A0310
Position (kb) 377
378 Strain fitness (log2 ratio) -2
-1
0
1 at 376.708 kb on + strand at 376.821 kb on + strand at 376.821 kb on + strand at 376.822 kb on - strand at 376.822 kb on - strand at 376.863 kb on - strand at 377.084 kb on - strand at 377.202 kb on + strand at 377.203 kb on - strand at 377.203 kb on - strand at 377.644 kb on + strand, within Rru_A0309 at 377.644 kb on + strand, within Rru_A0309 at 377.645 kb on - strand, within Rru_A0309 at 377.645 kb on - strand, within Rru_A0309 at 377.645 kb on - strand, within Rru_A0309 at 377.647 kb on - strand, within Rru_A0309 at 377.647 kb on - strand, within Rru_A0309 at 377.693 kb on - strand, within Rru_A0309 at 377.693 kb on - strand, within Rru_A0309 at 377.874 kb on - strand at 377.874 kb on - strand at 377.874 kb on - strand at 377.921 kb on + strand at 378.324 kb on + strand, within Rru_A0310 at 378.477 kb on + strand, within Rru_A0310 at 378.522 kb on + strand, within Rru_A0310 at 378.522 kb on + strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.532 kb on - strand, within Rru_A0310 at 378.532 kb on - strand, within Rru_A0310 at 378.567 kb on - strand, within Rru_A0310 at 378.602 kb on + strand, within Rru_A0310 at 378.656 kb on + strand, within Rru_A0310 at 378.657 kb on - strand, within Rru_A0310 at 378.777 kb on + strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 376,708 + -1.2 376,821 + -1.6 376,821 + +0.0 376,822 - +0.0 376,822 - +0.0 376,863 - +0.0 377,084 - +0.0 377,202 + +0.0 377,203 - +0.0 377,203 - +0.0 377,644 + Rru_A0309 0.66 +0.0 377,644 + Rru_A0309 0.66 -2.7 377,645 - Rru_A0309 0.66 -1.0 377,645 - Rru_A0309 0.66 -0.9 377,645 - Rru_A0309 0.66 +0.0 377,647 - Rru_A0309 0.66 +0.0 377,647 - Rru_A0309 0.66 -1.0 377,693 - Rru_A0309 0.73 -1.7 377,693 - Rru_A0309 0.73 +0.0 377,874 - -1.3 377,874 - +0.0 377,874 - -1.3 377,921 + +0.0 378,324 + Rru_A0310 0.32 +0.0 378,477 + Rru_A0310 0.43 +0.0 378,522 + Rru_A0310 0.46 -1.6 378,522 + Rru_A0310 0.46 +0.0 378,523 - Rru_A0310 0.46 -1.3 378,523 - Rru_A0310 0.46 +0.0 378,523 - Rru_A0310 0.46 +0.0 378,532 - Rru_A0310 0.47 +0.0 378,532 - Rru_A0310 0.47 +0.0 378,567 - Rru_A0310 0.49 -1.4 378,602 + Rru_A0310 0.52 +0.0 378,656 + Rru_A0310 0.56 +0.0 378,657 - Rru_A0310 0.56 +0.0 378,777 + Rru_A0310 0.65 +0.0 378,778 - Rru_A0310 0.65 -1.0 378,778 - Rru_A0310 0.65 +0.0 378,778 - Rru_A0310 0.65 +0.0 378,778 - Rru_A0310 0.65 +0.0 378,778 - Rru_A0310 0.65 +0.0
Or see this region's nucleotide sequence