Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0287

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0285 and Rru_A0286 are separated by 9 nucleotidesRru_A0286 and Rru_A0287 are separated by 48 nucleotidesRru_A0287 and Rru_A0288 are separated by 22 nucleotides Rru_A0285: Rru_A0285 - Aldehyde dehydrogenase (NCBI), at 350,136 to 351,656 _A0285 Rru_A0286: Rru_A0286 - hypothetical protein (NCBI), at 351,666 to 352,466 _A0286 Rru_A0287: Rru_A0287 - hypothetical protein (NCBI), at 352,515 to 353,675 _A0287 Rru_A0288: Rru_A0288 - 2,5-didehydrogluconate reductase (NCBI), at 353,698 to 354,522 _A0288 Position (kb) 352 353 354Strain fitness (log2 ratio) -2 -1 0 1at 351.579 kb on + strandat 351.579 kb on + strandat 351.579 kb on + strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.581 kb on + strandat 351.581 kb on + strandat 351.582 kb on - strandat 351.599 kb on + strandat 351.599 kb on + strandat 351.600 kb on - strandat 351.609 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.653 kb on - strandat 351.654 kb on + strandat 351.654 kb on + strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.694 kb on - strandat 351.694 kb on - strandat 351.696 kb on - strandat 351.927 kb on + strand, within Rru_A0286at 351.951 kb on + strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.954 kb on + strand, within Rru_A0286at 351.954 kb on + strand, within Rru_A0286at 351.955 kb on - strand, within Rru_A0286at 351.955 kb on - strand, within Rru_A0286at 352.144 kb on - strand, within Rru_A0286at 352.465 kb on - strandat 352.465 kb on - strandat 352.503 kb on + strandat 352.504 kb on - strandat 352.504 kb on - strandat 352.515 kb on - strandat 352.616 kb on + strandat 353.199 kb on + strand, within Rru_A0287at 353.199 kb on + strand, within Rru_A0287at 353.221 kb on - strand, within Rru_A0287at 353.316 kb on + strand, within Rru_A0287at 353.644 kb on + strandat 353.644 kb on + strandat 353.645 kb on - strandat 353.673 kb on + strandat 353.973 kb on + strand, within Rru_A0288at 353.973 kb on + strand, within Rru_A0288at 353.973 kb on + strand, within Rru_A0288at 353.974 kb on - strand, within Rru_A0288at 353.974 kb on - strand, within Rru_A0288at 353.974 kb on - strand, within Rru_A0288at 353.974 kb on - strand, within Rru_A0288at 353.975 kb on + strand, within Rru_A0288at 353.975 kb on + strand, within Rru_A0288at 353.975 kb on + strand, within Rru_A0288at 353.975 kb on + strand, within Rru_A0288at 353.975 kb on + strand, within Rru_A0288at 353.975 kb on + strand, within Rru_A0288at 353.976 kb on - strand, within Rru_A0288at 353.976 kb on - strand, within Rru_A0288at 353.976 kb on - strand, within Rru_A0288at 354.044 kb on + strand, within Rru_A0288at 354.045 kb on - strand, within Rru_A0288at 354.230 kb on + strand, within Rru_A0288at 354.231 kb on - strand, within Rru_A0288at 354.231 kb on - strand, within Rru_A0288at 354.231 kb on - strand, within Rru_A0288at 354.325 kb on - strand, within Rru_A0288at 354.383 kb on + strand, within Rru_A0288at 354.411 kb on - strand, within Rru_A0288at 354.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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351,579 + +0.1
351,579 + +0.1
351,579 + +0.1
351,580 - +0.1
351,580 - +0.1
351,580 - +0.1
351,580 - -1.4
351,581 + +0.1
351,581 + +0.1
351,582 - +0.1
351,599 + +0.1
351,599 + -1.9
351,600 - +0.1
351,609 + +0.1
351,652 + +0.1
351,652 + +0.1
351,652 + +0.1
351,652 + +0.1
351,653 - -1.4
351,654 + +0.1
351,654 + -0.7
351,655 - +0.1
351,655 - +0.1
351,655 - +0.1
351,655 - -1.0
351,693 + -1.7
351,693 + -1.2
351,693 + +1.4
351,693 + +0.1
351,693 + -1.2
351,694 - +0.1
351,694 - -1.3
351,696 - +0.1
351,927 + Rru_A0286 0.33 +0.1
351,951 + Rru_A0286 0.36 +0.1
351,952 - Rru_A0286 0.36 +0.1
351,952 - Rru_A0286 0.36 +0.1
351,952 - Rru_A0286 0.36 +0.1
351,954 + Rru_A0286 0.36 -1.3
351,954 + Rru_A0286 0.36 -0.9
351,955 - Rru_A0286 0.36 -0.9
351,955 - Rru_A0286 0.36 -0.9
352,144 - Rru_A0286 0.60 -1.2
352,465 - +0.1
352,465 - +0.1
352,503 + +0.1
352,504 - +0.1
352,504 - -1.4
352,515 - +0.1
352,616 + +0.1
353,199 + Rru_A0287 0.59 +0.1
353,199 + Rru_A0287 0.59 +0.1
353,221 - Rru_A0287 0.61 +0.1
353,316 + Rru_A0287 0.69 -2.4
353,644 + -0.6
353,644 + +0.1
353,645 - -1.5
353,673 + +0.1
353,973 + Rru_A0288 0.33 +0.1
353,973 + Rru_A0288 0.33 +0.1
353,973 + Rru_A0288 0.33 +0.1
353,974 - Rru_A0288 0.33 -0.9
353,974 - Rru_A0288 0.33 +0.1
353,974 - Rru_A0288 0.33 +0.1
353,974 - Rru_A0288 0.33 -1.2
353,975 + Rru_A0288 0.34 +0.1
353,975 + Rru_A0288 0.34 +0.1
353,975 + Rru_A0288 0.34 -1.1
353,975 + Rru_A0288 0.34 +0.1
353,975 + Rru_A0288 0.34 +0.1
353,975 + Rru_A0288 0.34 +0.1
353,976 - Rru_A0288 0.34 +0.1
353,976 - Rru_A0288 0.34 +0.0
353,976 - Rru_A0288 0.34 -0.9
354,044 + Rru_A0288 0.42 +0.1
354,045 - Rru_A0288 0.42 +0.1
354,230 + Rru_A0288 0.64 +0.1
354,231 - Rru_A0288 0.65 +0.1
354,231 - Rru_A0288 0.65 -1.6
354,231 - Rru_A0288 0.65 -1.1
354,325 - Rru_A0288 0.76 -1.6
354,383 + Rru_A0288 0.83 +0.1
354,411 - Rru_A0288 0.86 +0.1
354,551 + +0.1

Or see this region's nucleotide sequence