Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0267 and Rru_A0268 are separated by 39 nucleotides Rru_A0268 and Rru_A0269 are separated by 305 nucleotides Rru_A0269 and Rru_A0270 are separated by 163 nucleotides Rru_A0270 and Rru_A0271 are separated by 172 nucleotides
Rru_A0267: Rru_A0267 - Lytic transglycosylase, catalytic (NCBI), at 331,970 to 333,694
_A0267
Rru_A0268: Rru_A0268 - Molybdopterin binding domain (NCBI), at 333,734 to 334,282
_A0268
Rru_A0269: Rru_A0269 - hypothetical protein (NCBI), at 334,588 to 335,469
_A0269
Rru_A0270: Rru_A0270 - Protein of unknown function DUF525 (NCBI), at 335,633 to 336,040
_A0270
Rru_A0271: Rru_A0271 - GTP cyclohydrolase I (NCBI), at 336,213 to 336,917
_A0271
Position (kb) 334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 333.593 kb on + strand at 333.593 kb on + strand at 333.593 kb on + strand at 333.594 kb on - strand at 333.719 kb on + strand at 333.719 kb on + strand at 333.719 kb on + strand at 333.720 kb on - strand at 333.720 kb on - strand at 334.022 kb on + strand, within Rru_A0268 at 334.023 kb on - strand, within Rru_A0268 at 334.023 kb on - strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.261 kb on + strand at 334.261 kb on + strand at 334.262 kb on - strand at 334.262 kb on - strand at 334.280 kb on + strand at 334.281 kb on - strand at 334.281 kb on - strand at 334.281 kb on - strand at 334.319 kb on + strand at 334.320 kb on - strand at 334.320 kb on - strand at 334.555 kb on - strand at 334.641 kb on + strand at 334.651 kb on + strand at 334.651 kb on + strand at 335.536 kb on + strand at 335.536 kb on + strand at 335.536 kb on + strand at 335.536 kb on + strand at 335.537 kb on - strand at 335.537 kb on - strand at 335.537 kb on - strand at 335.548 kb on + strand at 335.549 kb on - strand at 335.566 kb on + strand at 335.628 kb on + strand at 335.629 kb on - strand at 335.651 kb on + strand at 335.651 kb on + strand at 335.651 kb on + strand at 335.652 kb on - strand at 335.733 kb on - strand, within Rru_A0270 at 335.733 kb on - strand, within Rru_A0270 at 335.744 kb on + strand, within Rru_A0270 at 335.744 kb on + strand, within Rru_A0270 at 335.745 kb on - strand, within Rru_A0270 at 335.897 kb on + strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.948 kb on + strand, within Rru_A0270 at 335.948 kb on + strand, within Rru_A0270 at 335.949 kb on - strand, within Rru_A0270 at 335.949 kb on - strand, within Rru_A0270 at 336.115 kb on + strand at 336.115 kb on + strand at 336.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 333,593 + +0.0 333,593 + +0.0 333,593 + -2.2 333,594 - +0.0 333,719 + +0.0 333,719 + -1.2 333,719 + +0.0 333,720 - +0.0 333,720 - +0.0 334,022 + Rru_A0268 0.52 +0.0 334,023 - Rru_A0268 0.53 +0.0 334,023 - Rru_A0268 0.53 +0.0 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 -1.0 334,133 + Rru_A0268 0.73 -0.6 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 -1.1 334,133 + Rru_A0268 0.73 -1.0 334,134 - Rru_A0268 0.73 +0.0 334,134 - Rru_A0268 0.73 +0.0 334,134 - Rru_A0268 0.73 +0.0 334,134 - Rru_A0268 0.73 +0.0 334,134 - Rru_A0268 0.73 -0.9 334,134 - Rru_A0268 0.73 -1.6 334,261 + +0.0 334,261 + -1.6 334,262 - +0.0 334,262 - +0.0 334,280 + -1.2 334,281 - +0.0 334,281 - +0.0 334,281 - +0.0 334,319 + +0.0 334,320 - +0.0 334,320 - +0.0 334,555 - +0.0 334,641 + -1.6 334,651 + +0.0 334,651 + +0.0 335,536 + -1.0 335,536 + +0.0 335,536 + +0.0 335,536 + +0.0 335,537 - +0.0 335,537 - +0.0 335,537 - -1.7 335,548 + +0.0 335,549 - -1.0 335,566 + +0.0 335,628 + +0.0 335,629 - -1.1 335,651 + -0.9 335,651 + +0.0 335,651 + +0.0 335,652 - -1.0 335,733 - Rru_A0270 0.25 +0.0 335,733 - Rru_A0270 0.25 +0.0 335,744 + Rru_A0270 0.27 +0.0 335,744 + Rru_A0270 0.27 +0.0 335,745 - Rru_A0270 0.27 +0.0 335,897 + Rru_A0270 0.65 +0.0 335,898 - Rru_A0270 0.65 +0.0 335,898 - Rru_A0270 0.65 -3.0 335,898 - Rru_A0270 0.65 -1.2 335,898 - Rru_A0270 0.65 -1.7 335,898 - Rru_A0270 0.65 -2.1 335,898 - Rru_A0270 0.65 -1.2 335,948 + Rru_A0270 0.77 +0.0 335,948 + Rru_A0270 0.77 -1.6 335,949 - Rru_A0270 0.77 +0.0 335,949 - Rru_A0270 0.77 +0.0 336,115 + +0.0 336,115 + +0.0 336,115 + -0.3
Or see this region's nucleotide sequence