Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0228

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0226 and Rru_A0227 are separated by 116 nucleotidesRru_A0227 and Rru_A0228 overlap by 4 nucleotidesRru_A0228 and Rru_A0229 are separated by 59 nucleotides Rru_A0226: Rru_A0226 - Major facilitator superfamily MFS_1 (NCBI), at 278,290 to 279,630 _A0226 Rru_A0227: Rru_A0227 - hypothetical protein (NCBI), at 279,747 to 280,085 _A0227 Rru_A0228: Rru_A0228 - Twin-arginine translocation pathway signal (NCBI), at 280,082 to 280,984 _A0228 Rru_A0229: Rru_A0229 - Glycosyl transferase, group 1 (NCBI), at 281,044 to 282,474 _A0229 Position (kb) 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1at 279.135 kb on - strand, within Rru_A0226at 279.135 kb on - strand, within Rru_A0226at 279.135 kb on - strand, within Rru_A0226at 279.135 kb on - strand, within Rru_A0226at 279.212 kb on + strand, within Rru_A0226at 279.225 kb on + strand, within Rru_A0226at 279.225 kb on + strand, within Rru_A0226at 279.226 kb on - strand, within Rru_A0226at 279.226 kb on - strand, within Rru_A0226at 279.227 kb on + strand, within Rru_A0226at 279.227 kb on + strand, within Rru_A0226at 279.227 kb on + strand, within Rru_A0226at 279.228 kb on - strand, within Rru_A0226at 279.228 kb on - strand, within Rru_A0226at 279.228 kb on - strand, within Rru_A0226at 279.228 kb on - strand, within Rru_A0226at 279.228 kb on - strand, within Rru_A0226at 279.270 kb on + strand, within Rru_A0226at 279.480 kb on - strand, within Rru_A0226at 279.480 kb on - strand, within Rru_A0226at 279.482 kb on + strand, within Rru_A0226at 279.820 kb on + strand, within Rru_A0227at 279.820 kb on + strand, within Rru_A0227at 279.821 kb on - strand, within Rru_A0227at 279.821 kb on - strand, within Rru_A0227at 279.841 kb on + strand, within Rru_A0227at 279.841 kb on + strand, within Rru_A0227at 280.171 kb on + strandat 280.171 kb on + strandat 280.171 kb on + strandat 280.171 kb on + strandat 280.171 kb on + strandat 280.171 kb on + strandat 280.172 kb on - strandat 280.172 kb on - strandat 280.172 kb on - strandat 280.172 kb on - strandat 280.172 kb on - strandat 280.172 kb on - strandat 280.172 kb on - strandat 280.173 kb on + strand, within Rru_A0228at 280.173 kb on + strand, within Rru_A0228at 280.173 kb on + strand, within Rru_A0228at 280.173 kb on + strand, within Rru_A0228at 280.174 kb on - strand, within Rru_A0228at 280.174 kb on - strand, within Rru_A0228at 280.174 kb on - strand, within Rru_A0228at 280.174 kb on - strand, within Rru_A0228at 280.487 kb on - strand, within Rru_A0228at 280.644 kb on + strand, within Rru_A0228at 280.645 kb on - strand, within Rru_A0228at 280.805 kb on - strand, within Rru_A0228at 280.984 kb on + strandat 280.984 kb on + strandat 281.190 kb on + strand, within Rru_A0229at 281.190 kb on + strand, within Rru_A0229at 281.191 kb on - strand, within Rru_A0229at 281.291 kb on - strand, within Rru_A0229at 281.408 kb on + strand, within Rru_A0229at 281.447 kb on + strand, within Rru_A0229at 281.447 kb on + strand, within Rru_A0229at 281.447 kb on + strand, within Rru_A0229at 281.448 kb on - strand, within Rru_A0229at 281.448 kb on - strand, within Rru_A0229at 281.448 kb on - strand, within Rru_A0229at 281.567 kb on + strand, within Rru_A0229at 281.885 kb on + strand, within Rru_A0229at 281.885 kb on + strand, within Rru_A0229at 281.886 kb on - strand, within Rru_A0229at 281.886 kb on - strand, within Rru_A0229at 281.886 kb on - strand, within Rru_A0229at 281.886 kb on - strand, within Rru_A0229

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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279,135 - Rru_A0226 0.63 +0.1
279,135 - Rru_A0226 0.63 +0.1
279,135 - Rru_A0226 0.63 -1.0
279,135 - Rru_A0226 0.63 +0.1
279,212 + Rru_A0226 0.69 +0.4
279,225 + Rru_A0226 0.70 +0.5
279,225 + Rru_A0226 0.70 -0.9
279,226 - Rru_A0226 0.70 +0.1
279,226 - Rru_A0226 0.70 -1.5
279,227 + Rru_A0226 0.70 -2.9
279,227 + Rru_A0226 0.70 +0.1
279,227 + Rru_A0226 0.70 +0.1
279,228 - Rru_A0226 0.70 -1.1
279,228 - Rru_A0226 0.70 +0.1
279,228 - Rru_A0226 0.70 +0.1
279,228 - Rru_A0226 0.70 +0.1
279,228 - Rru_A0226 0.70 -0.7
279,270 + Rru_A0226 0.73 -0.5
279,480 - Rru_A0226 0.89 -1.2
279,480 - Rru_A0226 0.89 +0.1
279,482 + Rru_A0226 0.89 -1.5
279,820 + Rru_A0227 0.22 -1.3
279,820 + Rru_A0227 0.22 -1.3
279,821 - Rru_A0227 0.22 +0.1
279,821 - Rru_A0227 0.22 +0.1
279,841 + Rru_A0227 0.28 +0.1
279,841 + Rru_A0227 0.28 -1.4
280,171 + +0.1
280,171 + +0.1
280,171 + -1.1
280,171 + +0.1
280,171 + +0.1
280,171 + -0.9
280,172 - -0.7
280,172 - +0.1
280,172 - +0.4
280,172 - +0.1
280,172 - +0.1
280,172 - +0.5
280,172 - +0.1
280,173 + Rru_A0228 0.10 -2.0
280,173 + Rru_A0228 0.10 +0.1
280,173 + Rru_A0228 0.10 +0.1
280,173 + Rru_A0228 0.10 +0.1
280,174 - Rru_A0228 0.10 +0.1
280,174 - Rru_A0228 0.10 +0.1
280,174 - Rru_A0228 0.10 +0.1
280,174 - Rru_A0228 0.10 -1.2
280,487 - Rru_A0228 0.45 -1.2
280,644 + Rru_A0228 0.62 +0.1
280,645 - Rru_A0228 0.62 +0.1
280,805 - Rru_A0228 0.80 -0.9
280,984 + +0.1
280,984 + -1.4
281,190 + Rru_A0229 0.10 -1.1
281,190 + Rru_A0229 0.10 +0.1
281,191 - Rru_A0229 0.10 +0.1
281,291 - Rru_A0229 0.17 -1.1
281,408 + Rru_A0229 0.25 -1.5
281,447 + Rru_A0229 0.28 +0.1
281,447 + Rru_A0229 0.28 -0.9
281,447 + Rru_A0229 0.28 -1.2
281,448 - Rru_A0229 0.28 +0.1
281,448 - Rru_A0229 0.28 -1.5
281,448 - Rru_A0229 0.28 +0.1
281,567 + Rru_A0229 0.37 +0.1
281,885 + Rru_A0229 0.59 +0.1
281,885 + Rru_A0229 0.59 +0.1
281,886 - Rru_A0229 0.59 +0.1
281,886 - Rru_A0229 0.59 -0.9
281,886 - Rru_A0229 0.59 -1.1
281,886 - Rru_A0229 0.59 +0.1

Or see this region's nucleotide sequence