Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0185 and Rru_A0186 overlap by 4 nucleotides Rru_A0186 and Rru_A0187 are separated by 596 nucleotides
Rru_A0185: Rru_A0185 - hypothetical protein (NCBI), at 222,076 to 224,034
_A0185
Rru_A0186: Rru_A0186 - hypothetical protein (NCBI), at 224,031 to 225,704
_A0186
Rru_A0187: Rru_A0187 - hypothetical protein (NCBI), at 226,301 to 226,591
_A0187
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1 at 223.276 kb on + strand, within Rru_A0185 at 223.276 kb on + strand, within Rru_A0185 at 223.277 kb on - strand, within Rru_A0185 at 223.357 kb on + strand, within Rru_A0185 at 224.071 kb on + strand at 224.072 kb on - strand at 224.211 kb on + strand, within Rru_A0186 at 224.212 kb on - strand, within Rru_A0186 at 224.253 kb on - strand, within Rru_A0186 at 224.253 kb on - strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.465 kb on - strand, within Rru_A0186 at 224.478 kb on + strand, within Rru_A0186 at 224.478 kb on + strand, within Rru_A0186 at 224.479 kb on - strand, within Rru_A0186 at 224.479 kb on - strand, within Rru_A0186 at 224.571 kb on + strand, within Rru_A0186 at 224.571 kb on + strand, within Rru_A0186 at 224.857 kb on - strand, within Rru_A0186 at 224.946 kb on - strand, within Rru_A0186 at 224.980 kb on + strand, within Rru_A0186 at 225.032 kb on + strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.281 kb on + strand, within Rru_A0186 at 225.568 kb on + strand at 225.568 kb on + strand at 225.568 kb on + strand at 225.569 kb on - strand at 225.665 kb on + strand at 225.667 kb on + strand at 225.667 kb on + strand at 225.667 kb on + strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.709 kb on + strand at 225.710 kb on - strand at 225.740 kb on + strand at 225.741 kb on - strand at 225.741 kb on - strand at 225.883 kb on + strand at 225.884 kb on - strand at 225.887 kb on + strand at 225.888 kb on - strand at 225.889 kb on + strand at 225.895 kb on + strand at 225.900 kb on + strand at 225.968 kb on - strand at 226.105 kb on + strand at 226.106 kb on - strand at 226.143 kb on - strand at 226.165 kb on - strand at 226.176 kb on - strand at 226.256 kb on + strand at 226.399 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.534 kb on + strand, within Rru_A0187 at 226.589 kb on + strand at 226.594 kb on - strand at 226.676 kb on + strand at 226.676 kb on + strand at 226.677 kb on - strand at 226.677 kb on - strand at 226.681 kb on + strand at 226.681 kb on + strand at 226.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 223,276 + Rru_A0185 0.61 -1.4 223,276 + Rru_A0185 0.61 +0.0 223,277 - Rru_A0185 0.61 +0.0 223,357 + Rru_A0185 0.65 +0.0 224,071 + -1.6 224,072 - -2.3 224,211 + Rru_A0186 0.11 +0.0 224,212 - Rru_A0186 0.11 +0.0 224,253 - Rru_A0186 0.13 -1.0 224,253 - Rru_A0186 0.13 +0.0 224,330 + Rru_A0186 0.18 -1.8 224,330 + Rru_A0186 0.18 -1.5 224,330 + Rru_A0186 0.18 +0.0 224,331 - Rru_A0186 0.18 +0.0 224,331 - Rru_A0186 0.18 +0.0 224,331 - Rru_A0186 0.18 +0.0 224,331 - Rru_A0186 0.18 +0.0 224,331 - Rru_A0186 0.18 +0.0 224,465 - Rru_A0186 0.26 +0.0 224,478 + Rru_A0186 0.27 +0.0 224,478 + Rru_A0186 0.27 -1.1 224,479 - Rru_A0186 0.27 +0.0 224,479 - Rru_A0186 0.27 +0.0 224,571 + Rru_A0186 0.32 -0.9 224,571 + Rru_A0186 0.32 +0.0 224,857 - Rru_A0186 0.49 +0.0 224,946 - Rru_A0186 0.55 +0.0 224,980 + Rru_A0186 0.57 +0.0 225,032 + Rru_A0186 0.60 +0.0 225,122 - Rru_A0186 0.65 +0.0 225,122 - Rru_A0186 0.65 -1.8 225,122 - Rru_A0186 0.65 +0.0 225,122 - Rru_A0186 0.65 -1.5 225,122 - Rru_A0186 0.65 +0.0 225,281 + Rru_A0186 0.75 +0.0 225,568 + +0.0 225,568 + -1.1 225,568 + +0.0 225,569 - +0.0 225,665 + +0.0 225,667 + +0.0 225,667 + +0.0 225,667 + -0.8 225,668 - +0.0 225,668 - -2.0 225,668 - +0.0 225,668 - +0.0 225,668 - +0.0 225,668 - +0.0 225,668 - +0.0 225,709 + +0.0 225,710 - +0.0 225,740 + -0.8 225,741 - +0.0 225,741 - +0.0 225,883 + -1.0 225,884 - +0.0 225,887 + +0.0 225,888 - +0.0 225,889 + +0.0 225,895 + +0.0 225,900 + +0.0 225,968 - -0.9 226,105 + -1.6 226,106 - +0.0 226,143 - +0.0 226,165 - -0.7 226,176 - +0.0 226,256 + +0.0 226,399 - Rru_A0187 0.34 +0.0 226,413 - Rru_A0187 0.38 +0.0 226,413 - Rru_A0187 0.38 -2.0 226,413 - Rru_A0187 0.38 -1.3 226,534 + Rru_A0187 0.80 -1.0 226,589 + -1.0 226,594 - -0.8 226,676 + +0.0 226,676 + +0.0 226,677 - -1.3 226,677 - +0.0 226,681 + +0.0 226,681 + +0.0 226,681 + +0.0
Or see this region's nucleotide sequence