Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0154 and Rru_A0155 are separated by 197 nucleotides Rru_A0155 and Rru_A0156 are separated by 181 nucleotides
Rru_A0154: Rru_A0154 - Dihydrodipicolinate reductase (NCBI), at 178,588 to 179,385
_A0154
Rru_A0155: Rru_A0155 - Transcriptional Regulator, TetR family (NCBI), at 179,583 to 180,251
_A0155
Rru_A0156: Rru_A0156 - Secretion protein HlyD (NCBI), at 180,433 to 181,605
_A0156
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1 at 179.488 kb on + strand at 179.489 kb on - strand at 179.585 kb on - strand at 179.593 kb on + strand at 179.824 kb on - strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.044 kb on - strand, within Rru_A0155 at 180.044 kb on - strand, within Rru_A0155 at 180.103 kb on + strand, within Rru_A0155 at 180.104 kb on - strand, within Rru_A0155 at 180.262 kb on - strand at 180.279 kb on + strand at 180.279 kb on + strand at 180.279 kb on + strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.313 kb on + strand at 180.314 kb on - strand at 180.622 kb on + strand, within Rru_A0156 at 180.622 kb on + strand, within Rru_A0156 at 180.622 kb on + strand, within Rru_A0156 at 180.623 kb on - strand, within Rru_A0156 at 180.623 kb on - strand, within Rru_A0156 at 180.624 kb on + strand, within Rru_A0156 at 180.667 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.736 kb on - strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 179,488 + -1.5 179,489 - +0.0 179,585 - +0.0 179,593 + +0.0 179,824 - Rru_A0155 0.36 +0.0 180,043 + Rru_A0155 0.69 +0.0 180,043 + Rru_A0155 0.69 +0.0 180,043 + Rru_A0155 0.69 -1.8 180,043 + Rru_A0155 0.69 +0.0 180,044 - Rru_A0155 0.69 +0.0 180,044 - Rru_A0155 0.69 +0.0 180,103 + Rru_A0155 0.78 -1.0 180,104 - Rru_A0155 0.78 +0.0 180,262 - +0.0 180,279 + +0.0 180,279 + +0.0 180,279 + +0.0 180,280 - +0.0 180,280 - +0.0 180,280 - -1.4 180,280 - -1.0 180,313 + +0.0 180,314 - +0.0 180,622 + Rru_A0156 0.16 +0.0 180,622 + Rru_A0156 0.16 -1.1 180,622 + Rru_A0156 0.16 -1.3 180,623 - Rru_A0156 0.16 -1.5 180,623 - Rru_A0156 0.16 -1.4 180,624 + Rru_A0156 0.16 +0.0 180,667 + Rru_A0156 0.20 +0.0 180,731 + Rru_A0156 0.25 -1.5 180,731 + Rru_A0156 0.25 -1.3 180,731 + Rru_A0156 0.25 +0.0 180,731 + Rru_A0156 0.25 +0.0 180,731 + Rru_A0156 0.25 -1.8 180,732 - Rru_A0156 0.25 +0.0 180,732 - Rru_A0156 0.25 +0.0 180,732 - Rru_A0156 0.25 +0.0 180,732 - Rru_A0156 0.25 +0.0 180,732 - Rru_A0156 0.25 +0.0 180,736 - Rru_A0156 0.26 +0.0 181,192 + Rru_A0156 0.65 -0.8 181,192 + Rru_A0156 0.65 +0.0 181,192 + Rru_A0156 0.65 -1.0 181,192 + Rru_A0156 0.65 -1.9 181,192 + Rru_A0156 0.65 +0.0 181,192 + Rru_A0156 0.65 +0.0 181,192 + Rru_A0156 0.65 +0.0 181,192 + Rru_A0156 0.65 +0.0 181,193 - Rru_A0156 0.65 +0.0 181,193 - Rru_A0156 0.65 +0.0 181,193 - Rru_A0156 0.65 +0.0 181,193 - Rru_A0156 0.65 -1.0 181,193 - Rru_A0156 0.65 -1.7 181,193 - Rru_A0156 0.65 -1.3
Or see this region's nucleotide sequence