Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0147 and Rru_A0148 are separated by 60 nucleotides Rru_A0148 and Rru_A0149 are separated by 12 nucleotides
Rru_A0147: Rru_A0147 - Major facilitator superfamily MFS_1 (NCBI), at 170,126 to 171,778
_A0147
Rru_A0148: Rru_A0148 - GTP-binding protein TypA (NCBI), at 171,839 to 173,680
_A0148
Rru_A0149: Rru_A0149 - PfkB (NCBI), at 173,693 to 174,916
_A0149
Position (kb) 171
172
173
174 Strain fitness (log2 ratio) -2
-1
0
1 at 170.949 kb on - strand, within Rru_A0147 at 171.085 kb on - strand, within Rru_A0147 at 171.193 kb on + strand, within Rru_A0147 at 171.194 kb on - strand, within Rru_A0147 at 171.195 kb on + strand, within Rru_A0147 at 171.195 kb on + strand, within Rru_A0147 at 171.195 kb on + strand, within Rru_A0147 at 171.195 kb on + strand, within Rru_A0147 at 171.195 kb on + strand, within Rru_A0147 at 171.196 kb on - strand, within Rru_A0147 at 171.196 kb on - strand, within Rru_A0147 at 171.196 kb on - strand, within Rru_A0147 at 171.196 kb on - strand, within Rru_A0147 at 171.365 kb on + strand, within Rru_A0147 at 171.365 kb on + strand, within Rru_A0147 at 171.365 kb on + strand, within Rru_A0147 at 171.365 kb on + strand, within Rru_A0147 at 171.365 kb on + strand, within Rru_A0147 at 171.365 kb on + strand, within Rru_A0147 at 171.366 kb on - strand, within Rru_A0147 at 171.366 kb on - strand, within Rru_A0147 at 171.366 kb on - strand, within Rru_A0147 at 171.366 kb on - strand, within Rru_A0147 at 171.471 kb on + strand, within Rru_A0147 at 171.471 kb on + strand, within Rru_A0147 at 171.819 kb on + strand at 171.951 kb on + strand at 171.951 kb on + strand at 171.951 kb on + strand at 171.951 kb on + strand at 171.952 kb on - strand at 171.952 kb on - strand at 171.952 kb on - strand at 172.167 kb on + strand, within Rru_A0148 at 172.498 kb on + strand, within Rru_A0148 at 172.498 kb on + strand, within Rru_A0148 at 172.499 kb on - strand, within Rru_A0148 at 172.499 kb on - strand, within Rru_A0148 at 172.500 kb on + strand, within Rru_A0148 at 172.501 kb on - strand, within Rru_A0148 at 172.501 kb on - strand, within Rru_A0148 at 172.773 kb on + strand, within Rru_A0148 at 172.773 kb on + strand, within Rru_A0148 at 172.773 kb on + strand, within Rru_A0148 at 172.774 kb on - strand, within Rru_A0148 at 172.849 kb on + strand, within Rru_A0148 at 173.020 kb on - strand, within Rru_A0148 at 173.029 kb on - strand, within Rru_A0148 at 173.704 kb on + strand at 173.704 kb on + strand at 173.704 kb on + strand at 173.705 kb on - strand at 173.705 kb on - strand at 174.211 kb on - strand, within Rru_A0149 at 174.222 kb on + strand, within Rru_A0149 at 174.222 kb on + strand, within Rru_A0149 at 174.222 kb on + strand, within Rru_A0149 at 174.223 kb on - strand, within Rru_A0149 at 174.223 kb on - strand, within Rru_A0149 at 174.223 kb on - strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.295 kb on - strand, within Rru_A0149 at 174.295 kb on - strand, within Rru_A0149 at 174.493 kb on + strand, within Rru_A0149 at 174.493 kb on + strand, within Rru_A0149 at 174.494 kb on - strand, within Rru_A0149 at 174.544 kb on - strand, within Rru_A0149
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 170,949 - Rru_A0147 0.50 -2.0 171,085 - Rru_A0147 0.58 +0.0 171,193 + Rru_A0147 0.65 +0.0 171,194 - Rru_A0147 0.65 +0.0 171,195 + Rru_A0147 0.65 -1.5 171,195 + Rru_A0147 0.65 +0.0 171,195 + Rru_A0147 0.65 -2.0 171,195 + Rru_A0147 0.65 +0.0 171,195 + Rru_A0147 0.65 +0.0 171,196 - Rru_A0147 0.65 +0.0 171,196 - Rru_A0147 0.65 +0.0 171,196 - Rru_A0147 0.65 +0.0 171,196 - Rru_A0147 0.65 +0.0 171,365 + Rru_A0147 0.75 +0.0 171,365 + Rru_A0147 0.75 +0.0 171,365 + Rru_A0147 0.75 -2.1 171,365 + Rru_A0147 0.75 +0.0 171,365 + Rru_A0147 0.75 +0.0 171,365 + Rru_A0147 0.75 +0.0 171,366 - Rru_A0147 0.75 +0.0 171,366 - Rru_A0147 0.75 +0.0 171,366 - Rru_A0147 0.75 -1.5 171,366 - Rru_A0147 0.75 +0.0 171,471 + Rru_A0147 0.81 +0.0 171,471 + Rru_A0147 0.81 +0.0 171,819 + +0.0 171,951 + -1.5 171,951 + -1.9 171,951 + -1.0 171,951 + +0.0 171,952 - +0.0 171,952 - +0.0 171,952 - +0.0 172,167 + Rru_A0148 0.18 +0.0 172,498 + Rru_A0148 0.36 +0.0 172,498 + Rru_A0148 0.36 +0.0 172,499 - Rru_A0148 0.36 +0.0 172,499 - Rru_A0148 0.36 +0.0 172,500 + Rru_A0148 0.36 +0.0 172,501 - Rru_A0148 0.36 +0.0 172,501 - Rru_A0148 0.36 +0.0 172,773 + Rru_A0148 0.51 -2.3 172,773 + Rru_A0148 0.51 -1.0 172,773 + Rru_A0148 0.51 +0.0 172,774 - Rru_A0148 0.51 -1.0 172,849 + Rru_A0148 0.55 +0.0 173,020 - Rru_A0148 0.64 +0.0 173,029 - Rru_A0148 0.65 +0.0 173,704 + +0.0 173,704 + +0.0 173,704 + -1.0 173,705 - +0.0 173,705 - +0.0 174,211 - Rru_A0149 0.42 +0.0 174,222 + Rru_A0149 0.43 +0.0 174,222 + Rru_A0149 0.43 +0.0 174,222 + Rru_A0149 0.43 +0.0 174,223 - Rru_A0149 0.43 +0.0 174,223 - Rru_A0149 0.43 +0.0 174,223 - Rru_A0149 0.43 +0.0 174,294 + Rru_A0149 0.49 +0.0 174,294 + Rru_A0149 0.49 -1.6 174,294 + Rru_A0149 0.49 +0.0 174,294 + Rru_A0149 0.49 +0.0 174,294 + Rru_A0149 0.49 -1.2 174,294 + Rru_A0149 0.49 +0.0 174,294 + Rru_A0149 0.49 +0.0 174,295 - Rru_A0149 0.49 +0.0 174,295 - Rru_A0149 0.49 -1.2 174,493 + Rru_A0149 0.65 +0.0 174,493 + Rru_A0149 0.65 -1.0 174,494 - Rru_A0149 0.65 +0.0 174,544 - Rru_A0149 0.70 -1.6
Or see this region's nucleotide sequence