Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4958

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4957 and Psyr_4958 overlap by 4 nucleotidesPsyr_4958 and Psyr_4959 are separated by 25 nucleotidesPsyr_4959 and Psyr_4960 overlap by 4 nucleotides Psyr_4957: Psyr_4957 - Protein of unknown function DUF1305, at 5,875,673 to 5,876,743 _4957 Psyr_4958: Psyr_4958 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 5,876,740 to 5,879,343 _4958 Psyr_4959: Psyr_4959 - conserved hypothetical protein, at 5,879,369 to 5,880,124 _4959 Psyr_4960: Psyr_4960 - protein of unknown function DUF876, at 5,880,121 to 5,881,464 _4960 Position (kb) 5876 5877 5878 5879 5880Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5875.778 kb on + strandat 5875.778 kb on + strandat 5875.779 kb on - strandat 5875.796 kb on - strand, within Psyr_4957at 5876.001 kb on + strand, within Psyr_4957at 5876.001 kb on + strand, within Psyr_4957at 5876.002 kb on - strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.105 kb on + strand, within Psyr_4957at 5876.106 kb on - strand, within Psyr_4957at 5876.106 kb on - strand, within Psyr_4957at 5876.114 kb on + strand, within Psyr_4957at 5876.115 kb on - strand, within Psyr_4957at 5876.156 kb on + strand, within Psyr_4957at 5876.156 kb on + strand, within Psyr_4957at 5876.246 kb on + strand, within Psyr_4957at 5876.246 kb on + strand, within Psyr_4957at 5876.246 kb on + strand, within Psyr_4957at 5876.247 kb on - strand, within Psyr_4957at 5876.247 kb on - strand, within Psyr_4957at 5876.312 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.465 kb on - strand, within Psyr_4957at 5876.465 kb on - strand, within Psyr_4957at 5876.555 kb on + strand, within Psyr_4957at 5876.556 kb on - strand, within Psyr_4957at 5876.556 kb on - strand, within Psyr_4957at 5876.610 kb on + strand, within Psyr_4957at 5876.643 kb on + strandat 5876.644 kb on - strandat 5876.644 kb on - strandat 5876.644 kb on - strandat 5876.909 kb on - strandat 5877.268 kb on - strand, within Psyr_4958at 5877.295 kb on + strand, within Psyr_4958at 5877.295 kb on + strand, within Psyr_4958at 5877.295 kb on + strand, within Psyr_4958at 5877.296 kb on - strand, within Psyr_4958at 5877.296 kb on - strand, within Psyr_4958at 5877.761 kb on - strand, within Psyr_4958at 5877.943 kb on + strand, within Psyr_4958at 5877.983 kb on + strand, within Psyr_4958at 5878.295 kb on + strand, within Psyr_4958at 5878.295 kb on + strand, within Psyr_4958at 5878.612 kb on + strand, within Psyr_4958at 5878.613 kb on - strand, within Psyr_4958at 5878.613 kb on - strand, within Psyr_4958at 5878.613 kb on - strand, within Psyr_4958at 5878.626 kb on + strand, within Psyr_4958at 5878.627 kb on - strand, within Psyr_4958at 5878.756 kb on + strand, within Psyr_4958at 5878.756 kb on + strand, within Psyr_4958at 5878.756 kb on + strand, within Psyr_4958at 5878.757 kb on - strand, within Psyr_4958at 5878.758 kb on + strand, within Psyr_4958at 5878.758 kb on + strand, within Psyr_4958at 5878.759 kb on - strand, within Psyr_4958at 5879.042 kb on - strand, within Psyr_4958at 5879.256 kb on - strandat 5879.329 kb on + strandat 5879.329 kb on + strandat 5879.329 kb on + strandat 5879.356 kb on + strandat 5879.356 kb on + strandat 5879.357 kb on - strandat 5879.357 kb on - strandat 5879.357 kb on - strandat 5879.357 kb on - strandat 5879.360 kb on + strandat 5879.360 kb on + strandat 5879.360 kb on + strandat 5879.361 kb on - strandat 5879.361 kb on - strandat 5879.361 kb on - strandat 5879.361 kb on - strandat 5879.367 kb on + strandat 5879.367 kb on + strandat 5879.367 kb on + strandat 5879.367 kb on + strandat 5879.368 kb on - strandat 5879.368 kb on - strandat 5879.374 kb on + strandat 5879.375 kb on - strandat 5879.616 kb on - strand, within Psyr_4959at 5879.616 kb on - strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.777 kb on + strand, within Psyr_4959at 5879.778 kb on - strand, within Psyr_4959at 5879.778 kb on - strand, within Psyr_4959at 5879.778 kb on - strand, within Psyr_4959at 5879.778 kb on - strand, within Psyr_4959at 5879.778 kb on - strand, within Psyr_4959at 5879.778 kb on - strand, within Psyr_4959at 5879.778 kb on - strand, within Psyr_4959at 5879.864 kb on - strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.909 kb on + strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5879.910 kb on - strand, within Psyr_4959at 5880.004 kb on + strand, within Psyr_4959at 5880.126 kb on + strandat 5880.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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5,875,778 + +0.0
5,875,778 + -0.6
5,875,779 - -0.6
5,875,796 - Psyr_4957 0.11 +0.2
5,876,001 + Psyr_4957 0.31 +0.2
5,876,001 + Psyr_4957 0.31 +1.7
5,876,002 - Psyr_4957 0.31 +0.5
5,876,017 + Psyr_4957 0.32 +0.8
5,876,017 + Psyr_4957 0.32 -0.6
5,876,017 + Psyr_4957 0.32 +0.6
5,876,017 + Psyr_4957 0.32 -0.6
5,876,017 + Psyr_4957 0.32 +0.3
5,876,017 + Psyr_4957 0.32 -0.8
5,876,018 - Psyr_4957 0.32 +0.3
5,876,018 - Psyr_4957 0.32 +0.3
5,876,018 - Psyr_4957 0.32 -0.5
5,876,018 - Psyr_4957 0.32 +0.9
5,876,018 - Psyr_4957 0.32 +0.0
5,876,105 + Psyr_4957 0.40 -0.5
5,876,106 - Psyr_4957 0.40 -0.8
5,876,106 - Psyr_4957 0.40 +0.7
5,876,114 + Psyr_4957 0.41 -1.8
5,876,115 - Psyr_4957 0.41 +0.3
5,876,156 + Psyr_4957 0.45 +0.4
5,876,156 + Psyr_4957 0.45 +0.4
5,876,246 + Psyr_4957 0.54 +0.4
5,876,246 + Psyr_4957 0.54 -0.5
5,876,246 + Psyr_4957 0.54 +0.1
5,876,247 - Psyr_4957 0.54 -0.4
5,876,247 - Psyr_4957 0.54 +0.3
5,876,312 + Psyr_4957 0.60 +0.6
5,876,460 + Psyr_4957 0.73 +0.5
5,876,460 + Psyr_4957 0.73 +0.1
5,876,460 + Psyr_4957 0.73 +1.1
5,876,460 + Psyr_4957 0.73 +0.7
5,876,460 + Psyr_4957 0.73 +0.0
5,876,460 + Psyr_4957 0.73 -0.2
5,876,461 - Psyr_4957 0.74 +0.7
5,876,461 - Psyr_4957 0.74 +1.5
5,876,461 - Psyr_4957 0.74 +1.4
5,876,461 - Psyr_4957 0.74 +1.0
5,876,461 - Psyr_4957 0.74 +0.1
5,876,461 - Psyr_4957 0.74 +1.0
5,876,461 - Psyr_4957 0.74 -0.2
5,876,465 - Psyr_4957 0.74 -1.3
5,876,465 - Psyr_4957 0.74 -0.4
5,876,555 + Psyr_4957 0.82 +0.7
5,876,556 - Psyr_4957 0.82 -0.1
5,876,556 - Psyr_4957 0.82 -0.6
5,876,610 + Psyr_4957 0.87 +0.7
5,876,643 + +0.4
5,876,644 - +0.1
5,876,644 - -1.5
5,876,644 - +0.2
5,876,909 - +1.3
5,877,268 - Psyr_4958 0.20 -1.0
5,877,295 + Psyr_4958 0.21 +0.7
5,877,295 + Psyr_4958 0.21 -0.4
5,877,295 + Psyr_4958 0.21 +0.2
5,877,296 - Psyr_4958 0.21 +0.0
5,877,296 - Psyr_4958 0.21 +1.6
5,877,761 - Psyr_4958 0.39 -1.4
5,877,943 + Psyr_4958 0.46 +0.9
5,877,983 + Psyr_4958 0.48 -0.7
5,878,295 + Psyr_4958 0.60 -0.1
5,878,295 + Psyr_4958 0.60 +0.4
5,878,612 + Psyr_4958 0.72 -0.4
5,878,613 - Psyr_4958 0.72 +0.9
5,878,613 - Psyr_4958 0.72 +0.4
5,878,613 - Psyr_4958 0.72 +0.4
5,878,626 + Psyr_4958 0.72 +0.4
5,878,627 - Psyr_4958 0.72 -0.1
5,878,756 + Psyr_4958 0.77 +0.1
5,878,756 + Psyr_4958 0.77 +0.1
5,878,756 + Psyr_4958 0.77 -0.8
5,878,757 - Psyr_4958 0.77 +1.0
5,878,758 + Psyr_4958 0.77 +0.2
5,878,758 + Psyr_4958 0.77 -0.2
5,878,759 - Psyr_4958 0.78 -0.2
5,879,042 - Psyr_4958 0.88 +1.2
5,879,256 - +1.0
5,879,329 + +2.6
5,879,329 + +1.6
5,879,329 + +3.3
5,879,356 + +0.0
5,879,356 + +1.4
5,879,357 - -0.1
5,879,357 - -2.4
5,879,357 - -0.5
5,879,357 - +3.3
5,879,360 + +0.8
5,879,360 + -0.5
5,879,360 + -0.5
5,879,361 - +0.3
5,879,361 - +0.8
5,879,361 - -0.7
5,879,361 - -0.1
5,879,367 + -1.6
5,879,367 + -0.3
5,879,367 + -1.6
5,879,367 + +0.5
5,879,368 - -0.2
5,879,368 - +0.8
5,879,374 + +0.9
5,879,375 - -0.3
5,879,616 - Psyr_4959 0.33 -0.4
5,879,616 - Psyr_4959 0.33 +0.2
5,879,777 + Psyr_4959 0.54 -0.6
5,879,777 + Psyr_4959 0.54 +0.2
5,879,777 + Psyr_4959 0.54 +0.7
5,879,777 + Psyr_4959 0.54 +0.1
5,879,777 + Psyr_4959 0.54 -0.2
5,879,777 + Psyr_4959 0.54 -0.4
5,879,777 + Psyr_4959 0.54 -0.1
5,879,777 + Psyr_4959 0.54 -0.5
5,879,777 + Psyr_4959 0.54 +1.0
5,879,777 + Psyr_4959 0.54 -0.5
5,879,777 + Psyr_4959 0.54 +0.2
5,879,778 - Psyr_4959 0.54 -0.5
5,879,778 - Psyr_4959 0.54 -0.4
5,879,778 - Psyr_4959 0.54 +1.6
5,879,778 - Psyr_4959 0.54 -0.9
5,879,778 - Psyr_4959 0.54 -0.6
5,879,778 - Psyr_4959 0.54 -0.4
5,879,778 - Psyr_4959 0.54 +2.7
5,879,864 - Psyr_4959 0.65 +0.3
5,879,909 + Psyr_4959 0.71 -0.1
5,879,909 + Psyr_4959 0.71 +0.9
5,879,909 + Psyr_4959 0.71 +0.1
5,879,909 + Psyr_4959 0.71 -1.1
5,879,909 + Psyr_4959 0.71 -0.5
5,879,909 + Psyr_4959 0.71 +1.6
5,879,909 + Psyr_4959 0.71 -1.1
5,879,909 + Psyr_4959 0.71 -2.1
5,879,909 + Psyr_4959 0.71 -0.8
5,879,909 + Psyr_4959 0.71 +1.0
5,879,909 + Psyr_4959 0.71 -1.1
5,879,909 + Psyr_4959 0.71 +2.0
5,879,909 + Psyr_4959 0.71 +0.2
5,879,910 - Psyr_4959 0.72 +0.5
5,879,910 - Psyr_4959 0.72 +0.3
5,879,910 - Psyr_4959 0.72 +0.3
5,879,910 - Psyr_4959 0.72 +0.1
5,879,910 - Psyr_4959 0.72 +0.3
5,879,910 - Psyr_4959 0.72 -0.5
5,879,910 - Psyr_4959 0.72 +0.2
5,879,910 - Psyr_4959 0.72 -0.4
5,879,910 - Psyr_4959 0.72 -0.3
5,879,910 - Psyr_4959 0.72 +0.0
5,879,910 - Psyr_4959 0.72 -2.1
5,879,910 - Psyr_4959 0.72 +0.8
5,879,910 - Psyr_4959 0.72 +1.1
5,879,910 - Psyr_4959 0.72 +0.5
5,879,910 - Psyr_4959 0.72 -0.5
5,879,910 - Psyr_4959 0.72 -1.7
5,880,004 + Psyr_4959 0.84 +0.8
5,880,126 + -0.8
5,880,185 - -0.6

Or see this region's nucleotide sequence