Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4770 and Psyr_4771 are separated by 147 nucleotides Psyr_4771 and Psyr_4772 are separated by 259 nucleotides
Psyr_4770: Psyr_4770 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 5,646,832 to 5,649,525
_4770
Psyr_4771: Psyr_4771 - Peptide methionine sulfoxide reductase, at 5,649,673 to 5,650,320
_4771
Psyr_4772: Psyr_4772 - Protein of unknown function DUF519, at 5,650,580 to 5,651,416
_4772
Position (kb) 5649
5650
5651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5648.740 kb on + strand, within Psyr_4770 at 5648.740 kb on + strand, within Psyr_4770 at 5648.741 kb on - strand, within Psyr_4770 at 5648.741 kb on - strand, within Psyr_4770 at 5648.741 kb on - strand, within Psyr_4770 at 5648.741 kb on - strand, within Psyr_4770 at 5648.803 kb on + strand, within Psyr_4770 at 5648.803 kb on + strand, within Psyr_4770 at 5648.803 kb on + strand, within Psyr_4770 at 5648.803 kb on + strand, within Psyr_4770 at 5648.803 kb on + strand, within Psyr_4770 at 5648.804 kb on - strand, within Psyr_4770 at 5648.804 kb on - strand, within Psyr_4770 at 5648.804 kb on - strand, within Psyr_4770 at 5648.804 kb on - strand, within Psyr_4770 at 5648.804 kb on - strand, within Psyr_4770 at 5648.947 kb on - strand, within Psyr_4770 at 5649.030 kb on - strand, within Psyr_4770 at 5649.030 kb on - strand, within Psyr_4770 at 5649.159 kb on + strand, within Psyr_4770 at 5649.245 kb on - strand, within Psyr_4770 at 5649.245 kb on - strand, within Psyr_4770 at 5649.448 kb on + strand at 5649.572 kb on - strand at 5649.572 kb on - strand at 5649.575 kb on - strand at 5649.594 kb on + strand at 5649.594 kb on + strand at 5649.594 kb on + strand at 5649.595 kb on - strand at 5649.595 kb on - strand at 5649.595 kb on - strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.666 kb on - strand at 5649.695 kb on + strand at 5649.710 kb on + strand at 5649.710 kb on + strand at 5649.711 kb on - strand at 5649.711 kb on - strand at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.937 kb on + strand, within Psyr_4771 at 5649.937 kb on + strand, within Psyr_4771 at 5649.938 kb on - strand, within Psyr_4771 at 5649.992 kb on - strand, within Psyr_4771 at 5649.992 kb on - strand, within Psyr_4771 at 5650.108 kb on + strand, within Psyr_4771 at 5650.108 kb on + strand, within Psyr_4771 at 5650.109 kb on - strand, within Psyr_4771 at 5650.109 kb on - strand, within Psyr_4771 at 5650.243 kb on + strand, within Psyr_4771 at 5650.243 kb on + strand, within Psyr_4771 at 5650.255 kb on + strand, within Psyr_4771 at 5650.255 kb on + strand, within Psyr_4771 at 5650.255 kb on + strand, within Psyr_4771 at 5650.255 kb on + strand, within Psyr_4771 at 5650.256 kb on - strand at 5650.398 kb on + strand at 5650.398 kb on + strand at 5650.401 kb on + strand at 5650.401 kb on + strand at 5650.491 kb on + strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.497 kb on + strand at 5650.797 kb on + strand, within Psyr_4772 at 5650.798 kb on - strand, within Psyr_4772 at 5650.798 kb on - strand, within Psyr_4772 at 5650.819 kb on + strand, within Psyr_4772 at 5651.178 kb on + strand, within Psyr_4772 at 5651.178 kb on + strand, within Psyr_4772 at 5651.179 kb on - strand, within Psyr_4772 at 5651.277 kb on + strand, within Psyr_4772 at 5651.277 kb on + strand, within Psyr_4772 at 5651.278 kb on - strand, within Psyr_4772
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 5,648,740 + Psyr_4770 0.71 +0.2 5,648,740 + Psyr_4770 0.71 +0.1 5,648,741 - Psyr_4770 0.71 +0.6 5,648,741 - Psyr_4770 0.71 +0.6 5,648,741 - Psyr_4770 0.71 +1.6 5,648,741 - Psyr_4770 0.71 -0.4 5,648,803 + Psyr_4770 0.73 -0.8 5,648,803 + Psyr_4770 0.73 +0.5 5,648,803 + Psyr_4770 0.73 +0.1 5,648,803 + Psyr_4770 0.73 +0.3 5,648,803 + Psyr_4770 0.73 -0.1 5,648,804 - Psyr_4770 0.73 +0.4 5,648,804 - Psyr_4770 0.73 -0.4 5,648,804 - Psyr_4770 0.73 +0.4 5,648,804 - Psyr_4770 0.73 +1.1 5,648,804 - Psyr_4770 0.73 -0.9 5,648,947 - Psyr_4770 0.79 +0.2 5,649,030 - Psyr_4770 0.82 +0.7 5,649,030 - Psyr_4770 0.82 -0.3 5,649,159 + Psyr_4770 0.86 +0.6 5,649,245 - Psyr_4770 0.90 +0.3 5,649,245 - Psyr_4770 0.90 -0.8 5,649,448 + +0.2 5,649,572 - +0.5 5,649,572 - -0.3 5,649,575 - +0.1 5,649,594 + +0.4 5,649,594 + -0.4 5,649,594 + +1.1 5,649,595 - +1.1 5,649,595 - -1.4 5,649,595 - -0.9 5,649,610 + -0.9 5,649,610 + +0.2 5,649,610 + -0.6 5,649,610 + -0.8 5,649,610 + -0.9 5,649,610 + +0.7 5,649,610 + +0.4 5,649,610 + +2.2 5,649,610 + -1.3 5,649,610 + +0.2 5,649,610 + -0.3 5,649,610 + +0.4 5,649,611 - +0.5 5,649,611 - +0.3 5,649,611 - +0.4 5,649,611 - +0.5 5,649,611 - +0.2 5,649,611 - +0.7 5,649,611 - -0.2 5,649,611 - +0.1 5,649,611 - -0.3 5,649,611 - +0.3 5,649,614 + -0.8 5,649,614 + +2.6 5,649,614 + -0.8 5,649,614 + +1.1 5,649,614 + +0.1 5,649,614 + -0.2 5,649,614 + -0.6 5,649,614 + -1.3 5,649,614 + -0.5 5,649,614 + +0.3 5,649,614 + +1.5 5,649,615 - +0.9 5,649,615 - -1.3 5,649,615 - -0.4 5,649,615 - +1.7 5,649,615 - -0.1 5,649,615 - +0.5 5,649,615 - +1.7 5,649,615 - -1.1 5,649,615 - +1.5 5,649,615 - -0.3 5,649,615 - -0.5 5,649,615 - -0.5 5,649,615 - +0.4 5,649,615 - -0.8 5,649,615 - +0.7 5,649,615 - +1.1 5,649,615 - -0.2 5,649,666 - +1.3 5,649,695 + +0.5 5,649,710 + -1.5 5,649,710 + -0.5 5,649,711 - -0.7 5,649,711 - -0.8 5,649,753 + Psyr_4771 0.12 -2.4 5,649,753 + Psyr_4771 0.12 +0.9 5,649,753 + Psyr_4771 0.12 +1.1 5,649,753 + Psyr_4771 0.12 -1.6 5,649,753 + Psyr_4771 0.12 +0.2 5,649,753 + Psyr_4771 0.12 +0.1 5,649,937 + Psyr_4771 0.41 +0.6 5,649,937 + Psyr_4771 0.41 -0.4 5,649,938 - Psyr_4771 0.41 -0.8 5,649,992 - Psyr_4771 0.49 +0.6 5,649,992 - Psyr_4771 0.49 +0.8 5,650,108 + Psyr_4771 0.67 +1.7 5,650,108 + Psyr_4771 0.67 -1.0 5,650,109 - Psyr_4771 0.67 -0.2 5,650,109 - Psyr_4771 0.67 +0.6 5,650,243 + Psyr_4771 0.88 +2.3 5,650,243 + Psyr_4771 0.88 -0.6 5,650,255 + Psyr_4771 0.90 +0.3 5,650,255 + Psyr_4771 0.90 +0.5 5,650,255 + Psyr_4771 0.90 +0.7 5,650,255 + Psyr_4771 0.90 +0.7 5,650,256 - -0.7 5,650,398 + -0.3 5,650,398 + -3.4 5,650,401 + +0.1 5,650,401 + -0.2 5,650,491 + -0.9 5,650,492 - +1.9 5,650,492 - -0.5 5,650,492 - -0.1 5,650,492 - +0.8 5,650,492 - -0.2 5,650,492 - -0.2 5,650,492 - -0.8 5,650,495 + -0.1 5,650,495 + +0.7 5,650,495 + +0.4 5,650,495 + +0.3 5,650,495 + +1.6 5,650,495 + -0.1 5,650,495 + -0.9 5,650,495 + +0.1 5,650,495 + -0.8 5,650,495 + +0.2 5,650,495 + -0.8 5,650,495 + +0.9 5,650,495 + -0.3 5,650,495 + +0.3 5,650,495 + +0.6 5,650,496 - +0.6 5,650,496 - -1.1 5,650,496 - +0.5 5,650,496 - +0.2 5,650,496 - -1.2 5,650,496 - +0.4 5,650,496 - +0.1 5,650,496 - -1.3 5,650,496 - -0.5 5,650,496 - +0.7 5,650,496 - +0.8 5,650,496 - +0.1 5,650,497 + -0.4 5,650,797 + Psyr_4772 0.26 +0.1 5,650,798 - Psyr_4772 0.26 +0.1 5,650,798 - Psyr_4772 0.26 +0.7 5,650,819 + Psyr_4772 0.29 +0.9 5,651,178 + Psyr_4772 0.71 -0.6 5,651,178 + Psyr_4772 0.71 +1.4 5,651,179 - Psyr_4772 0.72 -0.1 5,651,277 + Psyr_4772 0.83 -0.2 5,651,277 + Psyr_4772 0.83 +0.5 5,651,278 - Psyr_4772 0.83 -0.1
Or see this region's nucleotide sequence