Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4662 and Psyr_4663 are separated by 69 nucleotides Psyr_4663 and Psyr_4664 are separated by 76 nucleotides Psyr_4664 and Psyr_4665 are separated by 492 nucleotides
Psyr_4662: Psyr_4662 - Amino acid adenylation, at 5,523,096 to 5,527,136
_4662
Psyr_4663: Psyr_4663 - hypothetical protein, at 5,527,206 to 5,527,613
_4663
Psyr_4664: Psyr_4664 - Filamentation induced by cAMP protein Fic, at 5,527,690 to 5,528,820
_4664
Psyr_4665: Psyr_4665 - membrane protein, putative, at 5,529,313 to 5,530,389
_4665
Position (kb) 5527
5528
5529 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5526.961 kb on + strand at 5527.070 kb on + strand at 5527.070 kb on + strand at 5527.078 kb on + strand at 5527.078 kb on + strand at 5527.078 kb on + strand at 5527.078 kb on + strand at 5527.079 kb on - strand at 5527.079 kb on - strand at 5527.079 kb on - strand at 5527.079 kb on - strand at 5527.111 kb on - strand at 5527.146 kb on + strand at 5527.146 kb on + strand at 5527.146 kb on + strand at 5527.147 kb on - strand at 5527.147 kb on - strand at 5527.147 kb on - strand at 5527.147 kb on - strand at 5527.149 kb on + strand at 5527.149 kb on + strand at 5527.149 kb on + strand at 5527.149 kb on + strand at 5527.149 kb on + strand at 5527.149 kb on + strand at 5527.149 kb on + strand at 5527.149 kb on + strand at 5527.150 kb on - strand at 5527.150 kb on - strand at 5527.150 kb on - strand at 5527.150 kb on - strand at 5527.150 kb on - strand at 5527.231 kb on + strand at 5527.232 kb on - strand at 5527.232 kb on - strand at 5527.242 kb on + strand at 5527.242 kb on + strand at 5527.242 kb on + strand at 5527.242 kb on + strand at 5527.242 kb on + strand at 5527.244 kb on + strand at 5527.244 kb on + strand at 5527.244 kb on + strand at 5527.244 kb on + strand at 5527.244 kb on + strand at 5527.244 kb on + strand at 5527.245 kb on - strand at 5527.245 kb on - strand at 5527.245 kb on - strand at 5527.245 kb on - strand at 5527.245 kb on - strand at 5527.245 kb on - strand at 5527.245 kb on - strand at 5527.245 kb on - strand at 5527.245 kb on - strand at 5527.258 kb on + strand, within Psyr_4663 at 5527.258 kb on + strand, within Psyr_4663 at 5527.259 kb on - strand, within Psyr_4663 at 5527.391 kb on + strand, within Psyr_4663 at 5527.392 kb on - strand, within Psyr_4663 at 5527.449 kb on + strand, within Psyr_4663 at 5527.449 kb on + strand, within Psyr_4663 at 5527.449 kb on + strand, within Psyr_4663 at 5527.449 kb on + strand, within Psyr_4663 at 5527.449 kb on + strand, within Psyr_4663 at 5527.449 kb on + strand, within Psyr_4663 at 5527.449 kb on + strand, within Psyr_4663 at 5527.449 kb on + strand, within Psyr_4663 at 5527.450 kb on - strand, within Psyr_4663 at 5527.450 kb on - strand, within Psyr_4663 at 5527.450 kb on - strand, within Psyr_4663 at 5527.450 kb on - strand, within Psyr_4663 at 5527.451 kb on + strand, within Psyr_4663 at 5527.452 kb on - strand, within Psyr_4663 at 5527.576 kb on + strand at 5527.576 kb on + strand at 5527.576 kb on + strand at 5527.576 kb on + strand at 5527.577 kb on - strand at 5527.577 kb on - strand at 5527.577 kb on - strand at 5527.620 kb on + strand at 5527.654 kb on + strand at 5527.678 kb on + strand at 5527.769 kb on + strand at 5527.770 kb on - strand at 5527.870 kb on - strand, within Psyr_4664 at 5527.968 kb on + strand, within Psyr_4664 at 5527.968 kb on + strand, within Psyr_4664 at 5527.968 kb on + strand, within Psyr_4664 at 5527.968 kb on + strand, within Psyr_4664 at 5527.969 kb on - strand, within Psyr_4664 at 5527.969 kb on - strand, within Psyr_4664 at 5527.969 kb on - strand, within Psyr_4664 at 5528.052 kb on + strand, within Psyr_4664 at 5528.052 kb on + strand, within Psyr_4664 at 5528.052 kb on + strand, within Psyr_4664 at 5528.052 kb on + strand, within Psyr_4664 at 5528.053 kb on - strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.136 kb on + strand, within Psyr_4664 at 5528.137 kb on - strand, within Psyr_4664 at 5528.287 kb on - strand, within Psyr_4664 at 5528.306 kb on + strand, within Psyr_4664 at 5528.307 kb on - strand, within Psyr_4664 at 5528.393 kb on + strand, within Psyr_4664 at 5528.394 kb on - strand, within Psyr_4664 at 5528.443 kb on + strand, within Psyr_4664 at 5528.443 kb on + strand, within Psyr_4664 at 5528.444 kb on - strand, within Psyr_4664 at 5528.444 kb on - strand, within Psyr_4664 at 5528.444 kb on - strand, within Psyr_4664 at 5528.547 kb on + strand, within Psyr_4664 at 5528.548 kb on - strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.687 kb on - strand, within Psyr_4664 at 5528.687 kb on - strand, within Psyr_4664 at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.819 kb on - strand at 5528.819 kb on - strand at 5528.918 kb on + strand at 5528.918 kb on + strand at 5528.918 kb on + strand at 5528.919 kb on - strand at 5528.919 kb on - strand at 5528.919 kb on - strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.922 kb on - strand at 5528.922 kb on - strand at 5528.922 kb on - strand at 5529.064 kb on + strand at 5529.064 kb on + strand at 5529.064 kb on + strand at 5529.064 kb on + strand at 5529.065 kb on - strand at 5529.065 kb on - strand at 5529.065 kb on - strand at 5529.065 kb on - strand at 5529.079 kb on - strand at 5529.079 kb on - strand at 5529.081 kb on + strand at 5529.081 kb on + strand at 5529.082 kb on - strand at 5529.082 kb on - strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.110 kb on + strand at 5529.110 kb on + strand at 5529.121 kb on + strand at 5529.121 kb on + strand at 5529.121 kb on + strand at 5529.122 kb on - strand at 5529.122 kb on - strand at 5529.122 kb on - strand at 5529.122 kb on - strand at 5529.122 kb on - strand at 5529.126 kb on - strand at 5529.133 kb on + strand at 5529.134 kb on - strand at 5529.144 kb on - strand at 5529.144 kb on - strand at 5529.168 kb on + strand at 5529.168 kb on + strand at 5529.168 kb on + strand at 5529.168 kb on + strand at 5529.168 kb on + strand at 5529.169 kb on - strand at 5529.169 kb on - strand at 5529.169 kb on - strand at 5529.179 kb on + strand at 5529.180 kb on - strand at 5529.197 kb on + strand at 5529.198 kb on - strand at 5529.198 kb on - strand at 5529.198 kb on - strand at 5529.220 kb on + strand at 5529.220 kb on + strand at 5529.220 kb on + strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.251 kb on + strand at 5529.251 kb on + strand at 5529.251 kb on + strand at 5529.447 kb on + strand, within Psyr_4665 at 5529.448 kb on - strand, within Psyr_4665 at 5529.448 kb on - strand, within Psyr_4665 at 5529.568 kb on + strand, within Psyr_4665 at 5529.608 kb on + strand, within Psyr_4665 at 5529.609 kb on - strand, within Psyr_4665 at 5529.646 kb on + strand, within Psyr_4665 at 5529.646 kb on + strand, within Psyr_4665 at 5529.647 kb on - strand, within Psyr_4665 at 5529.647 kb on - strand, within Psyr_4665 at 5529.647 kb on - strand, within Psyr_4665 at 5529.682 kb on + strand, within Psyr_4665 at 5529.757 kb on + strand, within Psyr_4665 at 5529.757 kb on + strand, within Psyr_4665 at 5529.758 kb on - strand, within Psyr_4665 at 5529.758 kb on - strand, within Psyr_4665 at 5529.758 kb on - strand, within Psyr_4665
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 5,526,961 + -0.4 5,527,070 + +0.8 5,527,070 + -0.4 5,527,078 + +0.1 5,527,078 + -0.3 5,527,078 + +0.3 5,527,078 + +0.5 5,527,079 - +0.9 5,527,079 - -0.4 5,527,079 - -0.2 5,527,079 - +0.1 5,527,111 - -1.2 5,527,146 + -0.3 5,527,146 + -0.3 5,527,146 + +0.5 5,527,147 - -1.4 5,527,147 - +1.3 5,527,147 - -0.1 5,527,147 - -1.0 5,527,149 + -0.3 5,527,149 + -0.0 5,527,149 + +0.4 5,527,149 + -0.4 5,527,149 + +0.2 5,527,149 + -1.6 5,527,149 + +0.3 5,527,149 + +1.9 5,527,150 - +1.4 5,527,150 - +0.2 5,527,150 - +0.4 5,527,150 - -0.2 5,527,150 - -0.6 5,527,231 + +1.5 5,527,232 - -0.4 5,527,232 - +0.3 5,527,242 + -0.2 5,527,242 + +0.6 5,527,242 + +0.1 5,527,242 + -0.5 5,527,242 + -0.5 5,527,244 + -0.9 5,527,244 + +0.2 5,527,244 + +1.0 5,527,244 + -0.4 5,527,244 + -0.1 5,527,244 + +0.2 5,527,245 - +0.4 5,527,245 - -1.7 5,527,245 - +0.2 5,527,245 - +0.5 5,527,245 - -0.4 5,527,245 - +0.1 5,527,245 - +0.7 5,527,245 - -1.0 5,527,245 - -2.1 5,527,258 + Psyr_4663 0.13 -0.0 5,527,258 + Psyr_4663 0.13 +2.2 5,527,259 - Psyr_4663 0.13 -0.1 5,527,391 + Psyr_4663 0.45 +0.1 5,527,392 - Psyr_4663 0.46 -1.4 5,527,449 + Psyr_4663 0.60 +0.8 5,527,449 + Psyr_4663 0.60 +0.2 5,527,449 + Psyr_4663 0.60 -0.2 5,527,449 + Psyr_4663 0.60 -0.6 5,527,449 + Psyr_4663 0.60 +0.2 5,527,449 + Psyr_4663 0.60 +0.0 5,527,449 + Psyr_4663 0.60 +0.9 5,527,449 + Psyr_4663 0.60 +0.6 5,527,450 - Psyr_4663 0.60 +1.1 5,527,450 - Psyr_4663 0.60 +0.5 5,527,450 - Psyr_4663 0.60 +2.9 5,527,450 - Psyr_4663 0.60 -0.6 5,527,451 + Psyr_4663 0.60 -0.3 5,527,452 - Psyr_4663 0.60 -0.6 5,527,576 + +0.2 5,527,576 + +0.1 5,527,576 + -0.1 5,527,576 + -0.5 5,527,577 - -0.6 5,527,577 - -1.3 5,527,577 - +0.9 5,527,620 + +0.9 5,527,654 + +0.0 5,527,678 + -0.1 5,527,769 + +1.9 5,527,770 - +0.9 5,527,870 - Psyr_4664 0.16 +0.8 5,527,968 + Psyr_4664 0.25 +1.8 5,527,968 + Psyr_4664 0.25 +1.1 5,527,968 + Psyr_4664 0.25 -0.6 5,527,968 + Psyr_4664 0.25 +0.9 5,527,969 - Psyr_4664 0.25 +1.0 5,527,969 - Psyr_4664 0.25 +0.5 5,527,969 - Psyr_4664 0.25 +0.6 5,528,052 + Psyr_4664 0.32 -1.3 5,528,052 + Psyr_4664 0.32 +0.0 5,528,052 + Psyr_4664 0.32 +1.2 5,528,052 + Psyr_4664 0.32 -0.4 5,528,053 - Psyr_4664 0.32 +0.4 5,528,136 + Psyr_4664 0.39 +0.1 5,528,136 + Psyr_4664 0.39 -0.7 5,528,136 + Psyr_4664 0.39 +0.2 5,528,136 + Psyr_4664 0.39 +3.2 5,528,136 + Psyr_4664 0.39 +0.3 5,528,136 + Psyr_4664 0.39 -1.2 5,528,136 + Psyr_4664 0.39 +1.1 5,528,136 + Psyr_4664 0.39 -1.8 5,528,136 + Psyr_4664 0.39 +0.4 5,528,136 + Psyr_4664 0.39 +0.4 5,528,136 + Psyr_4664 0.39 +0.2 5,528,136 + Psyr_4664 0.39 -0.3 5,528,137 - Psyr_4664 0.40 -1.7 5,528,287 - Psyr_4664 0.53 +0.2 5,528,306 + Psyr_4664 0.54 +1.7 5,528,307 - Psyr_4664 0.55 -0.5 5,528,393 + Psyr_4664 0.62 -0.2 5,528,394 - Psyr_4664 0.62 -0.1 5,528,443 + Psyr_4664 0.67 +1.0 5,528,443 + Psyr_4664 0.67 +1.3 5,528,444 - Psyr_4664 0.67 +1.2 5,528,444 - Psyr_4664 0.67 +0.3 5,528,444 - Psyr_4664 0.67 -0.4 5,528,547 + Psyr_4664 0.76 -0.1 5,528,548 - Psyr_4664 0.76 +1.3 5,528,549 + Psyr_4664 0.76 -0.6 5,528,549 + Psyr_4664 0.76 +0.1 5,528,549 + Psyr_4664 0.76 +0.9 5,528,549 + Psyr_4664 0.76 +1.0 5,528,549 + Psyr_4664 0.76 +1.3 5,528,549 + Psyr_4664 0.76 +0.3 5,528,549 + Psyr_4664 0.76 -0.7 5,528,549 + Psyr_4664 0.76 +0.0 5,528,549 + Psyr_4664 0.76 -0.5 5,528,550 - Psyr_4664 0.76 +0.2 5,528,550 - Psyr_4664 0.76 +0.5 5,528,550 - Psyr_4664 0.76 +1.4 5,528,550 - Psyr_4664 0.76 -1.6 5,528,550 - Psyr_4664 0.76 +4.1 5,528,550 - Psyr_4664 0.76 -0.3 5,528,550 - Psyr_4664 0.76 +2.2 5,528,585 + Psyr_4664 0.79 +0.0 5,528,585 + Psyr_4664 0.79 -0.4 5,528,585 + Psyr_4664 0.79 +0.6 5,528,585 + Psyr_4664 0.79 +0.2 5,528,585 + Psyr_4664 0.79 +0.7 5,528,585 + Psyr_4664 0.79 +0.0 5,528,585 + Psyr_4664 0.79 -0.9 5,528,585 + Psyr_4664 0.79 +1.3 5,528,585 + Psyr_4664 0.79 +0.5 5,528,586 - Psyr_4664 0.79 +0.3 5,528,586 - Psyr_4664 0.79 -0.3 5,528,586 - Psyr_4664 0.79 +1.2 5,528,586 - Psyr_4664 0.79 +1.2 5,528,586 - Psyr_4664 0.79 -0.7 5,528,586 - Psyr_4664 0.79 +0.6 5,528,586 - Psyr_4664 0.79 +0.3 5,528,586 - Psyr_4664 0.79 -0.2 5,528,687 - Psyr_4664 0.88 +0.3 5,528,687 - Psyr_4664 0.88 -0.0 5,528,732 + +0.7 5,528,732 + +0.2 5,528,732 + -0.5 5,528,732 + -0.7 5,528,732 + +1.1 5,528,732 + +1.5 5,528,732 + +1.4 5,528,732 + -0.2 5,528,733 - +0.5 5,528,733 - +0.3 5,528,733 - +0.1 5,528,733 - +0.2 5,528,733 - -0.2 5,528,733 - +0.9 5,528,733 - +0.7 5,528,733 - -0.5 5,528,733 - -1.5 5,528,733 - -1.3 5,528,733 - +0.4 5,528,819 - -0.1 5,528,819 - -0.2 5,528,918 + -0.5 5,528,918 + +0.3 5,528,918 + +0.2 5,528,919 - -0.4 5,528,919 - +0.3 5,528,919 - +2.4 5,528,921 + -0.9 5,528,921 + -0.3 5,528,921 + -0.4 5,528,921 + -0.5 5,528,921 + -0.3 5,528,921 + +0.1 5,528,921 + +0.8 5,528,921 + -0.2 5,528,922 - +0.7 5,528,922 - -0.2 5,528,922 - -0.1 5,529,064 + -0.9 5,529,064 + +0.3 5,529,064 + +0.3 5,529,064 + +0.2 5,529,065 - +2.5 5,529,065 - +0.3 5,529,065 - +0.8 5,529,065 - +0.9 5,529,079 - +0.7 5,529,079 - -0.4 5,529,081 + +0.2 5,529,081 + -1.1 5,529,082 - +1.2 5,529,082 - +0.5 5,529,101 + +1.1 5,529,101 + +0.0 5,529,101 + -0.2 5,529,101 + -0.3 5,529,101 + +0.2 5,529,101 + +0.2 5,529,101 + -0.4 5,529,101 + -0.1 5,529,102 - -0.4 5,529,102 - +0.0 5,529,102 - +0.3 5,529,102 - +0.3 5,529,102 - -0.7 5,529,102 - -0.6 5,529,102 - +0.1 5,529,110 + -0.9 5,529,110 + +0.8 5,529,121 + +0.5 5,529,121 + +0.8 5,529,121 + +0.2 5,529,122 - -0.2 5,529,122 - -0.5 5,529,122 - -1.1 5,529,122 - -1.0 5,529,122 - -1.0 5,529,126 - +0.0 5,529,133 + -0.4 5,529,134 - -0.9 5,529,144 - +1.9 5,529,144 - -1.0 5,529,168 + -0.2 5,529,168 + +0.2 5,529,168 + +2.7 5,529,168 + -0.9 5,529,168 + -0.5 5,529,169 - -0.4 5,529,169 - +0.1 5,529,169 - +0.2 5,529,179 + +1.2 5,529,180 - +1.3 5,529,197 + -0.2 5,529,198 - -2.1 5,529,198 - +1.5 5,529,198 - +2.0 5,529,220 + +0.1 5,529,220 + +2.3 5,529,220 + -0.6 5,529,221 - -0.3 5,529,221 - +0.4 5,529,221 - -0.2 5,529,221 - -0.7 5,529,221 - -0.7 5,529,221 - +1.2 5,529,221 - +0.9 5,529,221 - +0.2 5,529,221 - -0.4 5,529,251 + +0.6 5,529,251 + +0.4 5,529,251 + -0.1 5,529,447 + Psyr_4665 0.12 -0.2 5,529,448 - Psyr_4665 0.13 +0.9 5,529,448 - Psyr_4665 0.13 +1.7 5,529,568 + Psyr_4665 0.24 +0.9 5,529,608 + Psyr_4665 0.27 -0.8 5,529,609 - Psyr_4665 0.27 -1.4 5,529,646 + Psyr_4665 0.31 +0.2 5,529,646 + Psyr_4665 0.31 +0.3 5,529,647 - Psyr_4665 0.31 +0.1 5,529,647 - Psyr_4665 0.31 +0.1 5,529,647 - Psyr_4665 0.31 +0.5 5,529,682 + Psyr_4665 0.34 -0.5 5,529,757 + Psyr_4665 0.41 +0.1 5,529,757 + Psyr_4665 0.41 +0.6 5,529,758 - Psyr_4665 0.41 -0.3 5,529,758 - Psyr_4665 0.41 -0.4 5,529,758 - Psyr_4665 0.41 +1.0
Or see this region's nucleotide sequence