Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4610 and Psyr_4611 overlap by 4 nucleotides Psyr_4611 and Psyr_4612 are separated by 186 nucleotides Psyr_4612 and Psyr_4613 are separated by 11 nucleotides
Psyr_4610: Psyr_4610 - phosphoglycolate phosphatase, at 5,468,046 to 5,468,864
_4610
Psyr_4611: Psyr_4611 - ribulose-5-phosphate 3-epimerase, at 5,468,861 to 5,469,535
_4611
Psyr_4612: Psyr_4612 - Binding-protein-dependent transport systems inner membrane component, at 5,469,722 to 5,470,543
_4612
Psyr_4613: Psyr_4613 - Binding-protein-dependent transport systems inner membrane component, at 5,470,555 to 5,471,802
_4613
Position (kb) 5469
5470
5471 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5469.574 kb on + strand at 5469.575 kb on - strand at 5469.575 kb on - strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.706 kb on - strand at 5469.706 kb on - strand at 5469.706 kb on - strand at 5469.706 kb on - strand at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.132 kb on + strand, within Psyr_4612 at 5470.132 kb on + strand, within Psyr_4612 at 5470.165 kb on - strand, within Psyr_4612 at 5470.165 kb on - strand, within Psyr_4612 at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.504 kb on - strand at 5470.504 kb on - strand at 5470.504 kb on - strand at 5470.531 kb on - strand at 5470.556 kb on + strand at 5470.557 kb on - strand at 5470.593 kb on + strand at 5470.593 kb on + strand at 5470.593 kb on + strand at 5470.593 kb on + strand at 5470.593 kb on + strand at 5470.593 kb on + strand at 5470.595 kb on + strand at 5470.595 kb on + strand at 5470.595 kb on + strand at 5470.596 kb on - strand at 5470.596 kb on - strand at 5470.596 kb on - strand at 5470.596 kb on - strand at 5470.596 kb on - strand at 5470.604 kb on + strand at 5470.680 kb on - strand, within Psyr_4613 at 5470.680 kb on - strand, within Psyr_4613 at 5470.695 kb on - strand, within Psyr_4613 at 5470.695 kb on - strand, within Psyr_4613 at 5470.742 kb on + strand, within Psyr_4613 at 5470.742 kb on + strand, within Psyr_4613 at 5470.742 kb on + strand, within Psyr_4613 at 5470.742 kb on + strand, within Psyr_4613 at 5470.742 kb on + strand, within Psyr_4613 at 5470.742 kb on + strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.743 kb on - strand, within Psyr_4613 at 5470.812 kb on - strand, within Psyr_4613 at 5470.868 kb on + strand, within Psyr_4613 at 5470.868 kb on + strand, within Psyr_4613 at 5470.868 kb on + strand, within Psyr_4613 at 5470.868 kb on + strand, within Psyr_4613 at 5470.868 kb on + strand, within Psyr_4613 at 5470.869 kb on - strand, within Psyr_4613 at 5470.869 kb on - strand, within Psyr_4613 at 5470.869 kb on - strand, within Psyr_4613 at 5470.899 kb on - strand, within Psyr_4613 at 5470.899 kb on - strand, within Psyr_4613 at 5470.899 kb on - strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.946 kb on + strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5470.947 kb on - strand, within Psyr_4613 at 5471.144 kb on + strand, within Psyr_4613 at 5471.144 kb on + strand, within Psyr_4613 at 5471.144 kb on + strand, within Psyr_4613 at 5471.145 kb on - strand, within Psyr_4613 at 5471.226 kb on - strand, within Psyr_4613 at 5471.226 kb on - strand, within Psyr_4613 at 5471.300 kb on + strand, within Psyr_4613 at 5471.300 kb on + strand, within Psyr_4613 at 5471.300 kb on + strand, within Psyr_4613 at 5471.300 kb on + strand, within Psyr_4613 at 5471.300 kb on + strand, within Psyr_4613 at 5471.301 kb on - strand, within Psyr_4613 at 5471.301 kb on - strand, within Psyr_4613 at 5471.304 kb on - strand, within Psyr_4613 at 5471.322 kb on + strand, within Psyr_4613 at 5471.323 kb on - strand, within Psyr_4613 at 5471.391 kb on + strand, within Psyr_4613 at 5471.391 kb on + strand, within Psyr_4613 at 5471.391 kb on + strand, within Psyr_4613 at 5471.391 kb on + strand, within Psyr_4613 at 5471.392 kb on - strand, within Psyr_4613 at 5471.392 kb on - strand, within Psyr_4613 at 5471.392 kb on - strand, within Psyr_4613 at 5471.392 kb on - strand, within Psyr_4613 at 5471.392 kb on - strand, within Psyr_4613 at 5471.393 kb on + strand, within Psyr_4613 at 5471.393 kb on + strand, within Psyr_4613 at 5471.393 kb on + strand, within Psyr_4613 at 5471.393 kb on + strand, within Psyr_4613 at 5471.394 kb on - strand, within Psyr_4613 at 5471.394 kb on - strand, within Psyr_4613 at 5471.394 kb on - strand, within Psyr_4613 at 5471.394 kb on - strand, within Psyr_4613 at 5471.394 kb on - strand, within Psyr_4613
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 5,469,574 + -0.2 5,469,575 - -0.2 5,469,575 - -0.2 5,469,705 + +0.8 5,469,705 + +3.8 5,469,705 + +0.7 5,469,705 + -0.2 5,469,705 + -0.5 5,469,706 - -0.4 5,469,706 - -0.8 5,469,706 - +1.3 5,469,706 - -0.2 5,470,128 + Psyr_4612 0.49 +0.9 5,470,128 + Psyr_4612 0.49 +1.6 5,470,128 + Psyr_4612 0.49 +1.1 5,470,128 + Psyr_4612 0.49 +1.3 5,470,128 + Psyr_4612 0.49 -0.3 5,470,128 + Psyr_4612 0.49 +1.8 5,470,128 + Psyr_4612 0.49 -0.5 5,470,128 + Psyr_4612 0.49 -0.9 5,470,129 - Psyr_4612 0.50 +2.8 5,470,129 - Psyr_4612 0.50 +0.5 5,470,129 - Psyr_4612 0.50 -0.0 5,470,129 - Psyr_4612 0.50 +0.4 5,470,129 - Psyr_4612 0.50 -0.8 5,470,129 - Psyr_4612 0.50 +0.1 5,470,129 - Psyr_4612 0.50 +0.2 5,470,129 - Psyr_4612 0.50 -0.4 5,470,129 - Psyr_4612 0.50 +1.4 5,470,129 - Psyr_4612 0.50 +1.5 5,470,129 - Psyr_4612 0.50 +0.0 5,470,129 - Psyr_4612 0.50 +0.7 5,470,132 + Psyr_4612 0.50 +1.8 5,470,132 + Psyr_4612 0.50 -0.2 5,470,165 - Psyr_4612 0.54 +0.5 5,470,165 - Psyr_4612 0.54 +2.1 5,470,500 + -0.3 5,470,500 + -0.0 5,470,500 + +1.0 5,470,500 + +0.4 5,470,500 + -2.5 5,470,500 + -1.2 5,470,501 - -1.2 5,470,501 - +0.4 5,470,501 - -0.2 5,470,501 - +1.0 5,470,501 - +0.5 5,470,501 - +1.3 5,470,504 - +0.7 5,470,504 - -0.6 5,470,504 - +0.5 5,470,531 - -0.3 5,470,556 + +0.5 5,470,557 - +0.8 5,470,593 + -0.3 5,470,593 + -0.6 5,470,593 + +0.5 5,470,593 + +1.6 5,470,593 + -0.5 5,470,593 + +1.1 5,470,595 + -0.6 5,470,595 + +0.4 5,470,595 + +0.8 5,470,596 - +2.1 5,470,596 - +0.2 5,470,596 - +1.8 5,470,596 - +0.5 5,470,596 - +0.8 5,470,604 + -1.0 5,470,680 - Psyr_4613 0.10 -0.3 5,470,680 - Psyr_4613 0.10 +1.7 5,470,695 - Psyr_4613 0.11 -1.2 5,470,695 - Psyr_4613 0.11 +1.6 5,470,742 + Psyr_4613 0.15 -0.1 5,470,742 + Psyr_4613 0.15 -0.7 5,470,742 + Psyr_4613 0.15 -1.1 5,470,742 + Psyr_4613 0.15 +1.7 5,470,742 + Psyr_4613 0.15 +1.4 5,470,742 + Psyr_4613 0.15 +1.1 5,470,743 - Psyr_4613 0.15 -1.3 5,470,743 - Psyr_4613 0.15 -0.1 5,470,743 - Psyr_4613 0.15 +1.0 5,470,743 - Psyr_4613 0.15 +0.5 5,470,743 - Psyr_4613 0.15 -0.4 5,470,743 - Psyr_4613 0.15 -1.0 5,470,743 - Psyr_4613 0.15 +0.1 5,470,743 - Psyr_4613 0.15 -0.3 5,470,743 - Psyr_4613 0.15 -0.8 5,470,743 - Psyr_4613 0.15 +0.2 5,470,743 - Psyr_4613 0.15 +0.2 5,470,812 - Psyr_4613 0.21 +1.2 5,470,868 + Psyr_4613 0.25 +1.4 5,470,868 + Psyr_4613 0.25 -0.9 5,470,868 + Psyr_4613 0.25 +0.4 5,470,868 + Psyr_4613 0.25 +1.1 5,470,868 + Psyr_4613 0.25 +2.4 5,470,869 - Psyr_4613 0.25 +0.3 5,470,869 - Psyr_4613 0.25 +0.5 5,470,869 - Psyr_4613 0.25 +0.7 5,470,899 - Psyr_4613 0.28 -1.0 5,470,899 - Psyr_4613 0.28 -0.1 5,470,899 - Psyr_4613 0.28 +2.0 5,470,946 + Psyr_4613 0.31 -0.7 5,470,946 + Psyr_4613 0.31 +0.3 5,470,946 + Psyr_4613 0.31 -0.5 5,470,946 + Psyr_4613 0.31 +0.8 5,470,946 + Psyr_4613 0.31 -0.2 5,470,946 + Psyr_4613 0.31 -0.1 5,470,946 + Psyr_4613 0.31 +1.2 5,470,946 + Psyr_4613 0.31 +0.6 5,470,946 + Psyr_4613 0.31 -0.1 5,470,946 + Psyr_4613 0.31 +0.1 5,470,947 - Psyr_4613 0.31 +2.0 5,470,947 - Psyr_4613 0.31 -0.3 5,470,947 - Psyr_4613 0.31 +3.8 5,470,947 - Psyr_4613 0.31 +0.4 5,470,947 - Psyr_4613 0.31 -0.2 5,470,947 - Psyr_4613 0.31 +0.0 5,470,947 - Psyr_4613 0.31 -0.4 5,470,947 - Psyr_4613 0.31 +0.7 5,470,947 - Psyr_4613 0.31 +0.4 5,470,947 - Psyr_4613 0.31 -0.0 5,471,144 + Psyr_4613 0.47 -0.0 5,471,144 + Psyr_4613 0.47 +0.3 5,471,144 + Psyr_4613 0.47 -1.5 5,471,145 - Psyr_4613 0.47 -1.7 5,471,226 - Psyr_4613 0.54 -0.7 5,471,226 - Psyr_4613 0.54 +0.6 5,471,300 + Psyr_4613 0.60 -1.2 5,471,300 + Psyr_4613 0.60 +0.4 5,471,300 + Psyr_4613 0.60 -0.1 5,471,300 + Psyr_4613 0.60 +0.4 5,471,300 + Psyr_4613 0.60 +0.2 5,471,301 - Psyr_4613 0.60 -0.4 5,471,301 - Psyr_4613 0.60 +2.2 5,471,304 - Psyr_4613 0.60 -1.0 5,471,322 + Psyr_4613 0.61 +0.5 5,471,323 - Psyr_4613 0.62 +1.8 5,471,391 + Psyr_4613 0.67 +0.1 5,471,391 + Psyr_4613 0.67 +0.4 5,471,391 + Psyr_4613 0.67 -1.3 5,471,391 + Psyr_4613 0.67 -0.3 5,471,392 - Psyr_4613 0.67 +0.8 5,471,392 - Psyr_4613 0.67 -0.9 5,471,392 - Psyr_4613 0.67 +0.1 5,471,392 - Psyr_4613 0.67 +1.1 5,471,392 - Psyr_4613 0.67 +1.0 5,471,393 + Psyr_4613 0.67 -0.4 5,471,393 + Psyr_4613 0.67 -1.2 5,471,393 + Psyr_4613 0.67 +0.8 5,471,393 + Psyr_4613 0.67 -2.1 5,471,394 - Psyr_4613 0.67 -0.0 5,471,394 - Psyr_4613 0.67 +2.8 5,471,394 - Psyr_4613 0.67 +1.3 5,471,394 - Psyr_4613 0.67 -0.0 5,471,394 - Psyr_4613 0.67 -1.1
Or see this region's nucleotide sequence