Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4506

Experiment: KB with Rotenone 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4505 and Psyr_4506 are separated by 6 nucleotidesPsyr_4506 and Psyr_4507 overlap by 4 nucleotidesPsyr_4507 and Psyr_4508 overlap by 1 nucleotides Psyr_4505: Psyr_4505 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 5,369,234 to 5,370,340 _4505 Psyr_4506: Psyr_4506 - Glycerophosphodiester phosphodiesterase, at 5,370,347 to 5,371,108 _4506 Psyr_4507: Psyr_4507 - Inositol monophosphatase, at 5,371,105 to 5,371,848 _4507 Psyr_4508: Psyr_4508 - Endo-1,4-beta-xylanase, at 5,371,848 to 5,372,960 _4508 Position (kb) 5370 5371 5372Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5369.353 kb on + strand, within Psyr_4505at 5369.510 kb on + strand, within Psyr_4505at 5369.511 kb on - strand, within Psyr_4505at 5369.511 kb on - strand, within Psyr_4505at 5369.511 kb on - strand, within Psyr_4505at 5369.637 kb on + strand, within Psyr_4505at 5369.638 kb on - strand, within Psyr_4505at 5369.825 kb on + strand, within Psyr_4505at 5369.825 kb on + strand, within Psyr_4505at 5369.825 kb on + strand, within Psyr_4505at 5369.825 kb on + strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.924 kb on + strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5370.179 kb on + strand, within Psyr_4505at 5370.179 kb on + strand, within Psyr_4505at 5370.179 kb on + strand, within Psyr_4505at 5370.180 kb on - strand, within Psyr_4505at 5370.407 kb on + strandat 5370.407 kb on + strandat 5370.407 kb on + strandat 5370.407 kb on + strandat 5370.408 kb on - strandat 5370.408 kb on - strandat 5370.580 kb on + strand, within Psyr_4506at 5370.835 kb on - strand, within Psyr_4506at 5370.846 kb on + strand, within Psyr_4506at 5370.847 kb on - strand, within Psyr_4506at 5370.847 kb on - strand, within Psyr_4506at 5370.857 kb on - strand, within Psyr_4506at 5370.918 kb on + strand, within Psyr_4506at 5370.918 kb on + strand, within Psyr_4506at 5370.918 kb on + strand, within Psyr_4506at 5370.918 kb on + strand, within Psyr_4506at 5370.919 kb on - strand, within Psyr_4506at 5370.919 kb on - strand, within Psyr_4506at 5370.919 kb on - strand, within Psyr_4506at 5370.919 kb on - strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.928 kb on - strand, within Psyr_4506at 5370.928 kb on - strand, within Psyr_4506at 5370.928 kb on - strand, within Psyr_4506at 5370.928 kb on - strand, within Psyr_4506at 5370.937 kb on + strand, within Psyr_4506at 5370.938 kb on - strand, within Psyr_4506at 5370.938 kb on - strand, within Psyr_4506at 5371.032 kb on + strandat 5371.032 kb on + strandat 5371.033 kb on - strandat 5371.033 kb on - strandat 5371.139 kb on + strandat 5371.139 kb on + strandat 5371.290 kb on + strand, within Psyr_4507at 5371.291 kb on - strand, within Psyr_4507at 5371.365 kb on + strand, within Psyr_4507at 5371.366 kb on - strand, within Psyr_4507at 5371.369 kb on + strand, within Psyr_4507at 5371.369 kb on + strand, within Psyr_4507at 5371.369 kb on + strand, within Psyr_4507at 5371.370 kb on - strand, within Psyr_4507at 5371.370 kb on - strand, within Psyr_4507at 5371.370 kb on - strand, within Psyr_4507at 5371.370 kb on - strand, within Psyr_4507at 5371.370 kb on - strand, within Psyr_4507at 5371.370 kb on - strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.408 kb on + strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.409 kb on - strand, within Psyr_4507at 5371.462 kb on + strand, within Psyr_4507at 5371.463 kb on - strand, within Psyr_4507at 5371.463 kb on - strand, within Psyr_4507at 5371.693 kb on + strand, within Psyr_4507at 5371.693 kb on + strand, within Psyr_4507at 5371.693 kb on + strand, within Psyr_4507at 5371.694 kb on - strand, within Psyr_4507at 5371.812 kb on - strandat 5371.847 kb on - strandat 5371.847 kb on - strandat 5372.065 kb on + strand, within Psyr_4508

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
remove
5,369,353 + Psyr_4505 0.11 +2.5
5,369,510 + Psyr_4505 0.25 +1.1
5,369,511 - Psyr_4505 0.25 +0.5
5,369,511 - Psyr_4505 0.25 +0.7
5,369,511 - Psyr_4505 0.25 +0.8
5,369,637 + Psyr_4505 0.36 -0.2
5,369,638 - Psyr_4505 0.36 -0.4
5,369,825 + Psyr_4505 0.53 -1.0
5,369,825 + Psyr_4505 0.53 -2.1
5,369,825 + Psyr_4505 0.53 +1.3
5,369,825 + Psyr_4505 0.53 -0.2
5,369,826 - Psyr_4505 0.53 -0.6
5,369,826 - Psyr_4505 0.53 +0.8
5,369,826 - Psyr_4505 0.53 +0.6
5,369,826 - Psyr_4505 0.53 +1.3
5,369,826 - Psyr_4505 0.53 -0.9
5,369,826 - Psyr_4505 0.53 +2.4
5,369,826 - Psyr_4505 0.53 +0.0
5,369,924 + Psyr_4505 0.62 +0.8
5,369,925 - Psyr_4505 0.62 +1.4
5,369,925 - Psyr_4505 0.62 +1.8
5,369,925 - Psyr_4505 0.62 -0.7
5,369,925 - Psyr_4505 0.62 -1.2
5,369,925 - Psyr_4505 0.62 -1.5
5,370,179 + Psyr_4505 0.85 +0.8
5,370,179 + Psyr_4505 0.85 +1.5
5,370,179 + Psyr_4505 0.85 +0.1
5,370,180 - Psyr_4505 0.85 +0.4
5,370,407 + -0.2
5,370,407 + -0.1
5,370,407 + +0.1
5,370,407 + +0.0
5,370,408 - +0.8
5,370,408 - +1.0
5,370,580 + Psyr_4506 0.31 +0.4
5,370,835 - Psyr_4506 0.64 +1.6
5,370,846 + Psyr_4506 0.65 -0.2
5,370,847 - Psyr_4506 0.66 +0.6
5,370,847 - Psyr_4506 0.66 +0.9
5,370,857 - Psyr_4506 0.67 -0.6
5,370,918 + Psyr_4506 0.75 +0.5
5,370,918 + Psyr_4506 0.75 +0.8
5,370,918 + Psyr_4506 0.75 +0.4
5,370,918 + Psyr_4506 0.75 +0.5
5,370,919 - Psyr_4506 0.75 -1.0
5,370,919 - Psyr_4506 0.75 -0.3
5,370,919 - Psyr_4506 0.75 +1.1
5,370,919 - Psyr_4506 0.75 +0.4
5,370,927 + Psyr_4506 0.76 -0.4
5,370,927 + Psyr_4506 0.76 +0.8
5,370,927 + Psyr_4506 0.76 +0.8
5,370,927 + Psyr_4506 0.76 +0.3
5,370,927 + Psyr_4506 0.76 +0.8
5,370,927 + Psyr_4506 0.76 +0.1
5,370,927 + Psyr_4506 0.76 -0.1
5,370,927 + Psyr_4506 0.76 +0.2
5,370,927 + Psyr_4506 0.76 +0.0
5,370,928 - Psyr_4506 0.76 -0.4
5,370,928 - Psyr_4506 0.76 -0.3
5,370,928 - Psyr_4506 0.76 -0.2
5,370,928 - Psyr_4506 0.76 +0.8
5,370,937 + Psyr_4506 0.77 +3.1
5,370,938 - Psyr_4506 0.78 +0.8
5,370,938 - Psyr_4506 0.78 +1.3
5,371,032 + +0.5
5,371,032 + -0.3
5,371,033 - +0.4
5,371,033 - +0.5
5,371,139 + -0.8
5,371,139 + +1.0
5,371,290 + Psyr_4507 0.25 -1.5
5,371,291 - Psyr_4507 0.25 +2.6
5,371,365 + Psyr_4507 0.35 +0.8
5,371,366 - Psyr_4507 0.35 +0.6
5,371,369 + Psyr_4507 0.35 -0.2
5,371,369 + Psyr_4507 0.35 -0.4
5,371,369 + Psyr_4507 0.35 +1.4
5,371,370 - Psyr_4507 0.36 +0.1
5,371,370 - Psyr_4507 0.36 +1.1
5,371,370 - Psyr_4507 0.36 -0.8
5,371,370 - Psyr_4507 0.36 +0.9
5,371,370 - Psyr_4507 0.36 -2.2
5,371,370 - Psyr_4507 0.36 -1.8
5,371,408 + Psyr_4507 0.41 -0.2
5,371,408 + Psyr_4507 0.41 +1.6
5,371,408 + Psyr_4507 0.41 -1.4
5,371,408 + Psyr_4507 0.41 +0.2
5,371,408 + Psyr_4507 0.41 +1.8
5,371,408 + Psyr_4507 0.41 +1.3
5,371,408 + Psyr_4507 0.41 -0.1
5,371,408 + Psyr_4507 0.41 +0.9
5,371,408 + Psyr_4507 0.41 -0.1
5,371,408 + Psyr_4507 0.41 +0.5
5,371,408 + Psyr_4507 0.41 -0.5
5,371,409 - Psyr_4507 0.41 +0.8
5,371,409 - Psyr_4507 0.41 +0.6
5,371,409 - Psyr_4507 0.41 +0.7
5,371,409 - Psyr_4507 0.41 +0.2
5,371,409 - Psyr_4507 0.41 +1.0
5,371,409 - Psyr_4507 0.41 +1.0
5,371,409 - Psyr_4507 0.41 +1.5
5,371,409 - Psyr_4507 0.41 +0.5
5,371,409 - Psyr_4507 0.41 +0.8
5,371,409 - Psyr_4507 0.41 -0.4
5,371,409 - Psyr_4507 0.41 +0.8
5,371,409 - Psyr_4507 0.41 -0.0
5,371,409 - Psyr_4507 0.41 -0.9
5,371,462 + Psyr_4507 0.48 +0.4
5,371,463 - Psyr_4507 0.48 +1.1
5,371,463 - Psyr_4507 0.48 -0.5
5,371,693 + Psyr_4507 0.79 -0.4
5,371,693 + Psyr_4507 0.79 +0.0
5,371,693 + Psyr_4507 0.79 -0.4
5,371,694 - Psyr_4507 0.79 -0.1
5,371,812 - +1.1
5,371,847 - -0.5
5,371,847 - +0.4
5,372,065 + Psyr_4508 0.19 +1.8

Or see this region's nucleotide sequence