Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3688

Experiment: KB with Rotenone 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3687 and Psyr_3688 are separated by 39 nucleotidesPsyr_3688 and Psyr_3689 are separated by 340 nucleotides Psyr_3687: Psyr_3687 - Protein of unknown function UPF0118, at 4,373,117 to 4,374,190 _3687 Psyr_3688: Psyr_3688 - conserved hypothetical protein, at 4,374,230 to 4,375,333 _3688 Psyr_3689: Psyr_3689 - phosphoribosylformylglycinamidine cyclo-ligase, at 4,375,674 to 4,376,732 _3689 Position (kb) 4374 4375 4376Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.450 kb on - strand, within Psyr_3687at 4373.450 kb on - strand, within Psyr_3687at 4373.450 kb on - strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.532 kb on + strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.691 kb on + strand, within Psyr_3687at 4373.758 kb on + strand, within Psyr_3687at 4373.803 kb on + strand, within Psyr_3687at 4373.804 kb on - strand, within Psyr_3687at 4374.078 kb on + strand, within Psyr_3687at 4374.078 kb on + strand, within Psyr_3687at 4374.078 kb on + strand, within Psyr_3687at 4374.079 kb on - strand, within Psyr_3687at 4374.079 kb on - strand, within Psyr_3687at 4374.079 kb on - strand, within Psyr_3687at 4374.086 kb on + strandat 4374.087 kb on - strandat 4374.181 kb on + strandat 4374.231 kb on + strandat 4374.243 kb on + strandat 4374.243 kb on + strandat 4374.244 kb on - strandat 4374.244 kb on - strandat 4374.426 kb on - strand, within Psyr_3688at 4374.525 kb on + strand, within Psyr_3688at 4374.766 kb on - strand, within Psyr_3688at 4375.310 kb on + strandat 4375.381 kb on + strandat 4375.381 kb on + strandat 4375.381 kb on + strandat 4375.381 kb on + strandat 4375.382 kb on - strandat 4375.382 kb on - strandat 4375.429 kb on + strandat 4375.430 kb on - strandat 4375.430 kb on - strandat 4375.434 kb on + strandat 4375.434 kb on + strandat 4375.434 kb on + strandat 4375.434 kb on + strandat 4375.435 kb on - strandat 4375.435 kb on - strandat 4375.435 kb on - strandat 4375.435 kb on - strandat 4375.435 kb on - strandat 4375.441 kb on + strandat 4375.442 kb on - strandat 4375.482 kb on + strandat 4375.482 kb on + strandat 4375.483 kb on - strandat 4375.640 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
remove
4,373,449 + Psyr_3687 0.31 +1.8
4,373,449 + Psyr_3687 0.31 +0.4
4,373,449 + Psyr_3687 0.31 -0.2
4,373,449 + Psyr_3687 0.31 -0.2
4,373,449 + Psyr_3687 0.31 -0.2
4,373,449 + Psyr_3687 0.31 +0.9
4,373,450 - Psyr_3687 0.31 -0.2
4,373,450 - Psyr_3687 0.31 -0.0
4,373,450 - Psyr_3687 0.31 -1.4
4,373,451 + Psyr_3687 0.31 +2.0
4,373,451 + Psyr_3687 0.31 -0.0
4,373,451 + Psyr_3687 0.31 +0.0
4,373,451 + Psyr_3687 0.31 +1.8
4,373,451 + Psyr_3687 0.31 +0.2
4,373,451 + Psyr_3687 0.31 -0.8
4,373,451 + Psyr_3687 0.31 +0.0
4,373,452 - Psyr_3687 0.31 +1.2
4,373,452 - Psyr_3687 0.31 +1.0
4,373,452 - Psyr_3687 0.31 +0.0
4,373,452 - Psyr_3687 0.31 -1.8
4,373,452 - Psyr_3687 0.31 -0.7
4,373,452 - Psyr_3687 0.31 +0.3
4,373,452 - Psyr_3687 0.31 +1.9
4,373,452 - Psyr_3687 0.31 +1.6
4,373,452 - Psyr_3687 0.31 -0.2
4,373,452 - Psyr_3687 0.31 -0.7
4,373,452 - Psyr_3687 0.31 +1.5
4,373,452 - Psyr_3687 0.31 +1.6
4,373,452 - Psyr_3687 0.31 -0.2
4,373,532 + Psyr_3687 0.39 +0.3
4,373,533 - Psyr_3687 0.39 -0.6
4,373,533 - Psyr_3687 0.39 +0.6
4,373,533 - Psyr_3687 0.39 -0.0
4,373,533 - Psyr_3687 0.39 +0.3
4,373,533 - Psyr_3687 0.39 -0.5
4,373,691 + Psyr_3687 0.53 +1.0
4,373,758 + Psyr_3687 0.60 -0.2
4,373,803 + Psyr_3687 0.64 +0.1
4,373,804 - Psyr_3687 0.64 +0.7
4,374,078 + Psyr_3687 0.89 -0.4
4,374,078 + Psyr_3687 0.89 -0.1
4,374,078 + Psyr_3687 0.89 -1.4
4,374,079 - Psyr_3687 0.90 +1.1
4,374,079 - Psyr_3687 0.90 -0.6
4,374,079 - Psyr_3687 0.90 -0.2
4,374,086 + -0.0
4,374,087 - +0.6
4,374,181 + +0.8
4,374,231 + +1.4
4,374,243 + -0.6
4,374,243 + +0.0
4,374,244 - +1.4
4,374,244 - +1.7
4,374,426 - Psyr_3688 0.18 +0.6
4,374,525 + Psyr_3688 0.27 +1.5
4,374,766 - Psyr_3688 0.49 +0.5
4,375,310 + +1.3
4,375,381 + +0.2
4,375,381 + +0.0
4,375,381 + -1.0
4,375,381 + +0.4
4,375,382 - +0.6
4,375,382 - +1.4
4,375,429 + +2.9
4,375,430 - +2.2
4,375,430 - -0.3
4,375,434 + +0.2
4,375,434 + +0.8
4,375,434 + -1.0
4,375,434 + -0.1
4,375,435 - -0.7
4,375,435 - +1.2
4,375,435 - +0.9
4,375,435 - -0.2
4,375,435 - +0.4
4,375,441 + -0.6
4,375,442 - +0.2
4,375,482 + +0.3
4,375,482 + +0.6
4,375,483 - +0.2
4,375,640 - -0.4

Or see this region's nucleotide sequence