Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3594 and Psyr_3595 are separated by 10 nucleotides Psyr_3595 and Psyr_3596 are separated by 93 nucleotides
Psyr_3594: Psyr_3594 - membrane protein-like protein, at 4,276,656 to 4,276,967
_3594
Psyr_3595: Psyr_3595 - Metallophosphoesterase, at 4,276,978 to 4,277,799
_3595
Psyr_3596: Psyr_3596 - Selenoprotein W-related protein, at 4,277,893 to 4,278,195
_3596
Position (kb) 4276
4277 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4275.680 kb on + strand at 4275.680 kb on + strand at 4275.681 kb on - strand at 4275.681 kb on - strand at 4275.681 kb on - strand at 4275.685 kb on - strand at 4275.856 kb on + strand at 4275.857 kb on - strand at 4275.857 kb on - strand at 4275.857 kb on - strand at 4275.861 kb on + strand at 4275.862 kb on - strand at 4275.862 kb on - strand at 4275.897 kb on + strand at 4275.898 kb on - strand at 4275.898 kb on - strand at 4276.084 kb on - strand at 4276.111 kb on - strand at 4276.228 kb on + strand at 4276.247 kb on + strand at 4276.483 kb on + strand at 4276.483 kb on + strand at 4276.483 kb on + strand at 4276.483 kb on + strand at 4276.483 kb on + strand at 4276.484 kb on - strand at 4276.484 kb on - strand at 4276.484 kb on - strand at 4276.484 kb on - strand at 4276.484 kb on - strand at 4276.484 kb on - strand at 4276.484 kb on - strand at 4276.484 kb on - strand at 4276.484 kb on - strand at 4276.526 kb on - strand at 4276.531 kb on + strand at 4276.531 kb on + strand at 4276.532 kb on - strand at 4276.586 kb on + strand at 4276.586 kb on + strand at 4276.587 kb on - strand at 4276.622 kb on + strand at 4276.622 kb on + strand at 4276.622 kb on + strand at 4276.622 kb on + strand at 4276.623 kb on - strand at 4276.624 kb on + strand at 4276.625 kb on - strand at 4276.695 kb on + strand, within Psyr_3594 at 4276.696 kb on - strand, within Psyr_3594 at 4276.704 kb on + strand, within Psyr_3594 at 4276.705 kb on - strand, within Psyr_3594 at 4276.705 kb on - strand, within Psyr_3594 at 4276.728 kb on - strand, within Psyr_3594 at 4276.932 kb on + strand, within Psyr_3594 at 4276.933 kb on - strand, within Psyr_3594 at 4276.933 kb on - strand, within Psyr_3594 at 4276.965 kb on + strand at 4276.966 kb on - strand at 4277.123 kb on + strand, within Psyr_3595 at 4277.300 kb on + strand, within Psyr_3595 at 4277.300 kb on + strand, within Psyr_3595 at 4277.300 kb on + strand, within Psyr_3595 at 4277.301 kb on - strand, within Psyr_3595 at 4277.301 kb on - strand, within Psyr_3595 at 4277.301 kb on - strand, within Psyr_3595 at 4277.351 kb on + strand, within Psyr_3595 at 4277.388 kb on - strand, within Psyr_3595 at 4277.537 kb on + strand, within Psyr_3595 at 4277.538 kb on - strand, within Psyr_3595 at 4277.538 kb on - strand, within Psyr_3595 at 4277.538 kb on - strand, within Psyr_3595 at 4277.538 kb on - strand, within Psyr_3595 at 4277.538 kb on - strand, within Psyr_3595 at 4277.609 kb on + strand, within Psyr_3595 at 4277.609 kb on + strand, within Psyr_3595 at 4277.609 kb on + strand, within Psyr_3595 at 4277.610 kb on - strand, within Psyr_3595 at 4277.610 kb on - strand, within Psyr_3595 at 4277.610 kb on - strand, within Psyr_3595 at 4277.610 kb on - strand, within Psyr_3595 at 4277.610 kb on - strand, within Psyr_3595 at 4277.657 kb on + strand, within Psyr_3595 at 4277.658 kb on - strand, within Psyr_3595 at 4277.658 kb on - strand, within Psyr_3595 at 4277.801 kb on + strand at 4277.801 kb on + strand at 4277.891 kb on + strand at 4277.891 kb on + strand at 4277.891 kb on + strand at 4277.891 kb on + strand at 4277.892 kb on - strand at 4277.894 kb on + strand at 4277.895 kb on - strand at 4277.895 kb on - strand at 4277.913 kb on + strand at 4277.913 kb on + strand at 4277.913 kb on + strand at 4277.913 kb on + strand at 4277.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 4,275,680 + +0.1 4,275,680 + +2.1 4,275,681 - -1.5 4,275,681 - +0.2 4,275,681 - +0.5 4,275,685 - -0.4 4,275,856 + +0.1 4,275,857 - +0.1 4,275,857 - +0.1 4,275,857 - -0.4 4,275,861 + -0.4 4,275,862 - +0.7 4,275,862 - +0.9 4,275,897 + -1.1 4,275,898 - -0.2 4,275,898 - -0.1 4,276,084 - -0.2 4,276,111 - -0.9 4,276,228 + +0.1 4,276,247 + +2.2 4,276,483 + -1.2 4,276,483 + +0.2 4,276,483 + -0.9 4,276,483 + -0.0 4,276,483 + +0.9 4,276,484 - +0.8 4,276,484 - +1.4 4,276,484 - +0.3 4,276,484 - -0.1 4,276,484 - +0.8 4,276,484 - +0.4 4,276,484 - +2.2 4,276,484 - +1.0 4,276,484 - -0.1 4,276,526 - +0.9 4,276,531 + +0.6 4,276,531 + +0.3 4,276,532 - +0.4 4,276,586 + -0.6 4,276,586 + +1.8 4,276,587 - +0.8 4,276,622 + -0.0 4,276,622 + +0.2 4,276,622 + +1.2 4,276,622 + -1.2 4,276,623 - +0.4 4,276,624 + +1.8 4,276,625 - +0.2 4,276,695 + Psyr_3594 0.12 +2.2 4,276,696 - Psyr_3594 0.13 -0.5 4,276,704 + Psyr_3594 0.15 +0.4 4,276,705 - Psyr_3594 0.16 +1.6 4,276,705 - Psyr_3594 0.16 -0.1 4,276,728 - Psyr_3594 0.23 +1.1 4,276,932 + Psyr_3594 0.88 +0.3 4,276,933 - Psyr_3594 0.89 +1.1 4,276,933 - Psyr_3594 0.89 +0.7 4,276,965 + +0.6 4,276,966 - -1.0 4,277,123 + Psyr_3595 0.18 -0.5 4,277,300 + Psyr_3595 0.39 +1.3 4,277,300 + Psyr_3595 0.39 -0.3 4,277,300 + Psyr_3595 0.39 -1.4 4,277,301 - Psyr_3595 0.39 +0.1 4,277,301 - Psyr_3595 0.39 +0.5 4,277,301 - Psyr_3595 0.39 +0.6 4,277,351 + Psyr_3595 0.45 +1.8 4,277,388 - Psyr_3595 0.50 +1.1 4,277,537 + Psyr_3595 0.68 +0.9 4,277,538 - Psyr_3595 0.68 +0.1 4,277,538 - Psyr_3595 0.68 +0.4 4,277,538 - Psyr_3595 0.68 -0.4 4,277,538 - Psyr_3595 0.68 +1.1 4,277,538 - Psyr_3595 0.68 +0.6 4,277,609 + Psyr_3595 0.77 +0.2 4,277,609 + Psyr_3595 0.77 +0.1 4,277,609 + Psyr_3595 0.77 -1.3 4,277,610 - Psyr_3595 0.77 -1.2 4,277,610 - Psyr_3595 0.77 +1.6 4,277,610 - Psyr_3595 0.77 -1.4 4,277,610 - Psyr_3595 0.77 -0.8 4,277,610 - Psyr_3595 0.77 -1.8 4,277,657 + Psyr_3595 0.83 -1.3 4,277,658 - Psyr_3595 0.83 +2.9 4,277,658 - Psyr_3595 0.83 -0.1 4,277,801 + +2.3 4,277,801 + -0.9 4,277,891 + -1.1 4,277,891 + +2.2 4,277,891 + -1.2 4,277,891 + +0.7 4,277,892 - -0.4 4,277,894 + -0.8 4,277,895 - +0.2 4,277,895 - -1.6 4,277,913 + -1.7 4,277,913 + -0.3 4,277,913 + +0.2 4,277,913 + +0.1 4,277,914 - -0.0
Or see this region's nucleotide sequence